在家中自行采集的超低容量血液样本中进行基因表达的纵向监测

C. Speake, Elizabeth Whalen, V. Gersuk, Damien Chaussabel, Jared M. Odegard, Carla J. Greenbaum
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引用次数: 12

摘要

血液转录谱可以作为有糖尿病风险或被诊断为糖尿病的受试者临床变化的生物标志物。然而,转录随时间的变化是知之甚少,由于不现实的频繁纵向静脉切开术在大患者队列。我们开发了一种新的转录组评估方法,可以应用于研究志愿者自己采集的手指刺血样本。用高通量定量聚合酶链反应(PCR),从手指棒中提取15 μL的血液,产生足够的RNA分析176个转录本。我们招募了13名1型糖尿病患者和14名对照者,在6个月的时间里,每周在家进行收集。受试者每周平均返回26个样本中的24个,并且成功获得了> 99%返回样本的转录数据。我们观察到手指穿刺数据与标准3ml静脉穿刺样本数据高度相关。干扰素刺激基因表达的增加与自我报告的呼吸道感染有关,表明可以使用该试验检测真实世界的转录变化。总之,我们表明,使用研究参与者在家中自行收集的超低容量血液样本对基因表达进行纵向监测是可行的,并且可以用于长期监测基因表达的频繁变化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Longitudinal monitoring of gene expression in ultra‐low‐volume blood samples self‐collected at home
Blood transcriptional profiles could serve as biomarkers of clinical changes in subjects at‐risk for or diagnosed with diabetes. However, transcriptional variation over time is poorly understood due to the impracticality of frequent longitudinal phlebotomy in large patient cohorts. We have developed a novel transcriptome assessment method that could be applied to fingerstick blood samples self‐collected by study volunteers. Fifteen μL of blood from a fingerstick yielded sufficient RNA to analyse > 176 transcripts by high‐throughput quantitative polymerase chain reaction (PCR). We enrolled 13 subjects with type 1 diabetes and 14 controls to perform weekly collections at home for a period of 6 months. Subjects returned an average of 24 of 26 total weekly samples, and transcript data were obtained successfully for > 99% of samples returned. A high degree of correlation between fingerstick data and data from a standard 3 mL venipuncture sample was observed. Increases in interferon‐stimulated gene expression were associated with self‐reported respiratory infections, indicating that real‐world transcriptional changes can be detected using this assay. In summary, we show that longitudinal monitoring of gene expression is feasible using ultra‐low‐volume blood samples self‐collected by study participants at home, and can be used to monitor changes in gene expression frequently over extended periods.
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