牙周炎和肝细胞癌之间潜在的共同分子机制:生物信息学分析和验证。

IF 2.6 4区 医学 Q2 GENETICS & HEREDITY
Xiaomiao Fan, Zimin Song, Wenguang Qin, Ting Yu, Baogang Peng, Yuqin Shen
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引用次数: 0

摘要

背景/目的:肝细胞癌(HCC)是癌症最常见的原发性肝癌,预后不良。牙周炎或牙齿脱落被认为与肝癌的发生及其不良预后有关。本研究旨在探索牙周炎与HCC之间的潜在关联和串扰机制。材料和方法:从基因表达综合数据库(GEO)中获取牙周炎和HCC微阵列数据集,并进行分析以获得差异表达(DE)的lncRNA、miRNA和mRNA。功能富集分析用于检测这些mRNA的功能。然后,构建了牙周炎相关HCC的ceRNA网络。采用最小绝对收缩选择算子(LASSO)回归、随机森林算法和支持向量机递归特征消除(SVM-RFE)来探讨mRNAs在牙周炎相关HCC中的诊断意义。Cox回归分析用于筛选HCC中具有预后意义的mRNA。定量实时PCR(qRT-PCR)和免疫组织化学(IHC)验证了这些mRNA在HCC组织中的表达。结果:构建了ceRNA网络。功能富集分析表明,该网络与免疫和炎症反应、细胞周期和肝脏代谢功能有关。LASSO、随机森林算法和SVM-RFE显示了DE mRNA对HCC的诊断意义。Cox回归分析显示MSH2、GRAMD1C和CTHRC1对HCC具有预后意义,qRT-PCR和IHC验证了这一发现。结论:牙周炎可能通过改变免疫和炎症反应、细胞周期和肝脏代谢功能来影响HCC的发生。MSH2、GRAMD1C和CTHRC1是HCC的潜在预后生物标志物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Potential Common Molecular Mechanisms Between Periodontitis and Hepatocellular Carcinoma: A Bioinformatic Analysis and Validation.

Background/aim: Hepatocellular carcinoma (HCC) is the most common primary liver cancer and has a poor prognosis. Periodontitis, or tooth loss, is considered to be related to hepatocarcinogenesis and its poor prognosis. This study aimed to explore potential associations and cross-talk mechanisms between periodontitis and HCC.

Materials and methods: Periodontitis and HCC microarray datasets were acquired from the Gene Expression Omnibus (GEO) database and were analyzed to obtain differentially expressed (DE) lncRNAs, miRNAs and mRNAs. Functional enrichment analysis was used to detect the functions of these mRNAs. Then, a ceRNA network of periodontitis-related HCC was constructed. Least absolute shrinkage and selection operator (LASSO) regression, random forest algorithm, and support vector machine-recursive feature elimination (SVM-RFE) were performed to explore the diagnostic significance of mRNAs in periodontitis-related HCC. Cox regression analyses were conducted to screen mRNAs with prognostic significance in HCC. Quantitative real-time PCR (qRT-PCR) and immunohistochemistry (IHC) were conducted to validate the expression of these mRNAs in HCC tissues.

Results: A ceRNA network was constructed. Functional enrichment analysis indicated that the network is associated with immune and inflammatory responses, the cell cycle and liver metabolic function. LASSO, random forest algorithm and SVM-RFE showed the diagnostic significance of DE mRNAs in HCC. Cox regression analyses revealed that MSH2, GRAMD1C and CTHRC1 have prognostic significance for HCC, and qRT-PCR and IHC validated this finding.

Conclusion: Periodontitis may affect the occurrence of HCC by changing the immune and inflammatory response, the cell cycle and liver metabolic function. MSH2, GRAMD1C and CTHRC1 are potential prognostic biomarkers for HCC.

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来源期刊
Cancer Genomics & Proteomics
Cancer Genomics & Proteomics ONCOLOGY-GENETICS & HEREDITY
CiteScore
5.00
自引率
8.00%
发文量
51
期刊介绍: Cancer Genomics & Proteomics (CGP) is an international peer-reviewed journal designed to publish rapidly high quality articles and reviews on the application of genomic and proteomic technology to basic, experimental and clinical cancer research. In this site you may find information concerning the editorial board, editorial policy, issue contents, subscriptions, submission of manuscripts and advertising. The first issue of CGP circulated in January 2004. Cancer Genomics & Proteomics is a journal of the International Institute of Anticancer Research. From January 2013 CGP is converted to an online-only open access journal. Cancer Genomics & Proteomics supports (a) the aims and the research projects of the INTERNATIONAL INSTITUTE OF ANTICANCER RESEARCH and (b) the organization of the INTERNATIONAL CONFERENCES OF ANTICANCER RESEARCH.
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