无患Presbytis gnoectus或P.femoralis、Colobine分子系统发育和GenBank提交的新生成DNA序列

IF 1.2 4区 生物学 Q2 ZOOLOGY
V. Nijman
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引用次数: 4

摘要

在很大程度上,通过使用基于多个标记的过时分子系统发生学,在揭示亚洲物种的进化史方面取得了巨大进展。Presbytis叶猴就是一个很好的例子,发现了更多的异地物种,来自苏门答腊的Presbytisthomasi而不是来自明打威群岛的P.potenziani是该群中最基础的物种,并且发现来自婆罗洲的P.rubicunda嵌套在苏门答腊物种中,在过去130万年中才进入婆罗洲。基于线粒体d环的变异,最近有人认为马来西亚的P.femoralis femoralis实际上是P.gnoctus gnoctus。不幸的是,尽管有可用的序列,但来自类型所在地新加坡的序列被排除在分析之外,并且没有一个新生成的序列保存在GenBank中。我手动重建了这些序列,这使我能够呈现一个分子系统发育,其中包括来自西马来西亚和新加坡的8个额外序列。来自马来西亚的P.gnoctus和来自新加坡的P.femoralis形成一个单系分支,分歧最小。我的结论是,对P.negnoctus的认识是错误的,该名称是P.femoralis的初级同义词。Colobine分类学和系统学已经取得并将继续取得进展,主要是通过考虑来自广泛个体、物种和数据集(分子、行为和形态学)的证据,而不是专注于来自一个小地理区域的1或2个物种的单分子标记。对于可以评估和重新解释证据的有序分类学辩论,新生成的序列必须存放在公共存储库中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Presbytis neglectus or P. femoralis, Colobine Molecular Phylogenies, and GenBank Submission of Newly Generated DNA Sequences
Great progress has been made in unravelling the evolutionary history of Asian colobines, largely through the use of dated molecular phylogenies based on multiple markers. The Presbytis langurs are a case in point, with more allopatric species being identified, recognition of Presbytis thomasi from Sumatra rather than P. potenziani from the Mentawai Islands as being the most basal species of the group, and the discovery that P. rubicunda from Borneo is nested among the Sumatran species and only made it to Borneo in the last 1.3 million years. Based on variation in mitochondrial d-loop, it has recently been argued that Malaysia’s P. femoralis femoralis is actually P. neglectus neglectus. Unfortunately, despite being available, sequences from the type locality, Singapore, were excluded from the analysis, and none of the newly generated sequences was deposited in GenBank. I manually reconstructed these sequences, which allowed me to present a molecular phylogeny that includes 8 additional sequences from West Malaysia and Singapore. P. neglectus from Malaysia and P. femoralis from Singapore form one monophyletic clade, with minimal divergence. I conclude that recognition of P. neglectus is erroneous and the name is a junior synonym of P. femoralis. Colobine taxonomy and systematics have advanced, and continue to advance, mostly by considering evidence from a wide range of individuals, species and data sets (molecular, behavioural and morphological) rather than focusing on single molecular markers from 1 or 2 species from one small geographic area. For an orderly taxonomic debate where evidence can be evaluated and reinterpreted it is essential that newly generated sequences are deposited in public repositories.
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来源期刊
Folia Primatologica
Folia Primatologica 生物-动物学
CiteScore
3.30
自引率
10.50%
发文量
36
审稿时长
>12 weeks
期刊介绍: Recognizing that research in human biology must be founded on a comparative knowledge of our closest relatives, this journal is the natural scientist''s ideal means of access to the best of current primate research. ''Folia Primatologica'' covers fields as diverse as molecular biology and social behaviour, and features articles on ecology, conservation, palaeontology, systematics and functional anatomy. In-depth articles and invited reviews are contributed by the world’s leading primatologists. In addition, special issues provide rapid peer-reviewed publication of conference proceedings. ''Folia Primatologica'' is one of the top-rated primatology publications and is acknowledged worldwide as a high-impact core journal for primatologists, zoologists and anthropologists.
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