利用COI和细胞色素b基因对Odisha Chandipur海岸发现的Cynoglossus lingua Hamilton, 1822鱼的遗传特征进行了分析

IF 0.6 Q4 ENVIRONMENTAL SCIENCES
R. Jena, A. K. Rout, A. Jana, B. Behera, B. K. Behera
{"title":"利用COI和细胞色素b基因对Odisha Chandipur海岸发现的Cynoglossus lingua Hamilton, 1822鱼的遗传特征进行了分析","authors":"R. Jena, A. K. Rout, A. Jana, B. Behera, B. K. Behera","doi":"10.22438/jeb/44/3/mrn-5069","DOIUrl":null,"url":null,"abstract":"Aim: In this study we characterized the fish Cynoglossus lingua collected from Chandipur Coast of Odisha using the mtDNA markers cytochrome c oxidase I (COI) and cytochrome b (Cyt-b) genes. Methodology: Samples of flat fish were collected from Balaramgadi fish landing center, Chandipur sea beach, Odisha coast. The collected specimens were initially identified based on the morphology using standard taxonomic keys. Molecular characterization was accomplished through PCR amplification of COI and Cyt-b genes. The sequences were subjected to BLAST analysis and aligned using Clustal W for homology mapping. Phylogenetic status was inferred by the neighbor-joining method using MEGA v7.0. Results: The taxonomic keys and the COI and Cyt-b gene sequences identified the specimens as C. lingua. The COI and Cyt-b gene sequences showed 98% and 99% sequence similarity with C. lingua isolate FMU.CIFRI.FF-7 COI gene (GenBank accession: MN889532.1) and the C. lingua isolate FM.CIFRI.CYTB.FF-7 Cyt-b gene (GenBank accession MT362541.1), respectively. Interpretation: The study supports the reliability of combining classical taxonomic approaches with molecular analysis using COI and Cyt-b genes for the identification of C. lingua. Key words: Cynoglossus lingua, COI gene, Cytochrome b gene, DNA barcoding, Molecular taxonomy","PeriodicalId":15688,"journal":{"name":"Journal of environmental biology","volume":" ","pages":""},"PeriodicalIF":0.6000,"publicationDate":"2023-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genetic characterization of fish, Cynoglossus lingua Hamilton, 1822 found in Chandipur Coast of Odisha using COI and Cytochrome b genes\",\"authors\":\"R. Jena, A. K. Rout, A. Jana, B. Behera, B. K. Behera\",\"doi\":\"10.22438/jeb/44/3/mrn-5069\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Aim: In this study we characterized the fish Cynoglossus lingua collected from Chandipur Coast of Odisha using the mtDNA markers cytochrome c oxidase I (COI) and cytochrome b (Cyt-b) genes. Methodology: Samples of flat fish were collected from Balaramgadi fish landing center, Chandipur sea beach, Odisha coast. The collected specimens were initially identified based on the morphology using standard taxonomic keys. Molecular characterization was accomplished through PCR amplification of COI and Cyt-b genes. The sequences were subjected to BLAST analysis and aligned using Clustal W for homology mapping. Phylogenetic status was inferred by the neighbor-joining method using MEGA v7.0. Results: The taxonomic keys and the COI and Cyt-b gene sequences identified the specimens as C. lingua. The COI and Cyt-b gene sequences showed 98% and 99% sequence similarity with C. lingua isolate FMU.CIFRI.FF-7 COI gene (GenBank accession: MN889532.1) and the C. lingua isolate FM.CIFRI.CYTB.FF-7 Cyt-b gene (GenBank accession MT362541.1), respectively. Interpretation: The study supports the reliability of combining classical taxonomic approaches with molecular analysis using COI and Cyt-b genes for the identification of C. lingua. Key words: Cynoglossus lingua, COI gene, Cytochrome b gene, DNA barcoding, Molecular taxonomy\",\"PeriodicalId\":15688,\"journal\":{\"name\":\"Journal of environmental biology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2023-05-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of environmental biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.22438/jeb/44/3/mrn-5069\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of environmental biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.22438/jeb/44/3/mrn-5069","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

目的:利用mtDNA标记细胞色素c氧化酶I (COI)和细胞色素b (Cyt-b)基因对在印度奥里萨邦昌迪普尔海岸采集的Cynoglossus lingua鱼进行鉴定。方法:在奥里萨邦海岸Chandipur海滩Balaramgadi鱼类登陆中心采集比目鱼样本。采用标准分类键对采集的标本进行形态学初步鉴定。通过PCR扩增COI和Cyt-b基因完成分子鉴定。对序列进行BLAST分析,并利用簇W进行同源性比对。采用MEGA v7.0软件通过邻居连接法推断系统发育状态。结果:经分类键和COI、Cyt-b基因序列鉴定,标本属舌蝉。COI和Cyt-b基因序列与C. lingua分离株FMU.CIFRI序列相似性分别为98%和99%。FF-7 COI基因(GenBank登录号:MN889532.1)和C. lingua分离物FM.CIFRI.CYTB。FF-7 Cyt-b基因(GenBank登录MT362541.1)。解释:本研究支持经典分类学方法与利用COI和Cyt-b基因进行分子分析相结合的方法对舌蝇进行鉴定的可靠性。关键词:舌舌,COI基因,细胞色素b基因,DNA条形码,分子分类学
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genetic characterization of fish, Cynoglossus lingua Hamilton, 1822 found in Chandipur Coast of Odisha using COI and Cytochrome b genes
Aim: In this study we characterized the fish Cynoglossus lingua collected from Chandipur Coast of Odisha using the mtDNA markers cytochrome c oxidase I (COI) and cytochrome b (Cyt-b) genes. Methodology: Samples of flat fish were collected from Balaramgadi fish landing center, Chandipur sea beach, Odisha coast. The collected specimens were initially identified based on the morphology using standard taxonomic keys. Molecular characterization was accomplished through PCR amplification of COI and Cyt-b genes. The sequences were subjected to BLAST analysis and aligned using Clustal W for homology mapping. Phylogenetic status was inferred by the neighbor-joining method using MEGA v7.0. Results: The taxonomic keys and the COI and Cyt-b gene sequences identified the specimens as C. lingua. The COI and Cyt-b gene sequences showed 98% and 99% sequence similarity with C. lingua isolate FMU.CIFRI.FF-7 COI gene (GenBank accession: MN889532.1) and the C. lingua isolate FM.CIFRI.CYTB.FF-7 Cyt-b gene (GenBank accession MT362541.1), respectively. Interpretation: The study supports the reliability of combining classical taxonomic approaches with molecular analysis using COI and Cyt-b genes for the identification of C. lingua. Key words: Cynoglossus lingua, COI gene, Cytochrome b gene, DNA barcoding, Molecular taxonomy
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of environmental biology
Journal of environmental biology ENVIRONMENTAL SCIENCES-
CiteScore
1.70
自引率
0.00%
发文量
92
审稿时长
3 months
期刊介绍: Information not localized
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信