桔梗叶绿体全基因组研究

IF 0.8 Q4 PLANT SCIENCES
Jongsun Park, Hong Xi
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引用次数: 0

摘要

大花Campsis grandiflora(Thunb.)K.Schum是一种具有多种生物学效应的观赏植物。在韩国分离的大花C.grandiflora叶绿体基因组长154293bp(GC比率:38.1%),有四个亚区:84121bp的大单拷贝(36.2%)和18521bp的小单拷贝(30.0%)区域被24332bp的反向重复(42.9%)区域分隔开,其中包括132个基因(87个蛋白质编码基因、8个rRNA和37个tRNA)。鉴定出一个单核苷酸多态性和五个插入和缺失(INDEL)区(共40个bp),表明叶绿体基因组的种内变异水平较低。所有五个INDEL区域都与重复序列相连。72个正常简单序列重复序列(ssr)和47个扩展ssr被鉴定为开发分子标记。通过对29个具有代表性的大花科叶绿体基因组的系统发育树分析,表明其部落级系统发育关系与前人的研究结果一致。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The complete chloroplast genome of Campsis grandiflora (Bignoniaceae)
Campsis grandiflora (Thunb.) K. Schum is an ornamental species with various useful biological effects. The chloroplast genome of C. grandiflora isolated in Korea is 154,293 bp long (GC ratio: 38.1%) and has four subregions: 84,121 bp of large single-copy (36.2%) and 18,521 bp of small single-copy (30.0%) regions are separated by 24,332 bp of inverted repeat (42.9%) regions including 132 genes (87 protein-coding genes, eight rRNAs, and 37 tRNAs). One single-nucleotide polymorphism and five insertion and deletion (INDEL) regions (40-bp in total) were identified, indicating a low level of intraspecific variation in the chloroplast genome. All five INDEL regions were linked to the repetitive sequences. Seventy-two normal simple sequence repeats (SSRs) and 47 extended SSRs were identified to develop molecular markers. The phylogenetic trees of 29 representative Bignoniaceae chloroplast genomes indicate that the tribe-level phylogenic relationship is congruent with the findings of previous studies.
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来源期刊
KOREAN JOURNAL OF PLANT TAXONOMY
KOREAN JOURNAL OF PLANT TAXONOMY Agricultural and Biological Sciences-Plant Science
CiteScore
1.50
自引率
40.00%
发文量
23
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