系统偏见和鞘翅目的系统发育——对蔡等人的回应(2022)继对蔡等人(2020)的回应之后

IF 4.7 1区 农林科学 Q1 ENTOMOLOGY
Brendon E. Boudinot, Martin Fikáček, Ziv E. Lieberman, Dominik Kusy, Ladislav Bocak, Duane D. Mckenna, Rolf Georg Beutel
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引用次数: 2

摘要

系统偏见是过去二十年中出现的主要系统发育问题之一。蔡和同事(2022)(=CEA22)使用旨在减少成分和速率异质性的方法,重新分析了张等人的鞘翅目的DNA序列数据集。(2018)(=ZEA)。CEA22表明,他们关于鞘翅目的系统发育结果和主要进化假说应该比最近发表的其他研究更受欢迎。在这里,我们讨论了CEA22的方法论,特别注意他们对ZEA的敷衍重新分析如何混淆而不是阐明甲虫的系统发育。与他们早期研究的已发表反驳类似,我们特别发现他们的许多说法具有误导性、无根据或虚假。至关重要的是,CEA22未能为其重新分析建立既定前提。他们未能证明组成或速率异质性是如何影响ZEA的系统发育估计的,更不用说最近其他研究的结果了。此外,尽管他们声称对鞘翅目进行了全面采样,但他们的数据集在包括的物种和高等分类群方面既不是最多样化的,在序列数据和采样位点方面也不是最大的。尽管CEA22确实为校准提供了额外的化石,但建议那些寻求基于分子数据对鞘翅目系统发育和进化进行最佳估计的人去别处寻找。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Systematic bias and the phylogeny of Coleoptera—A response to Cai et al. (2022) following the responses to Cai et al. (2020)

Systematic bias and the phylogeny of Coleoptera—A response to Cai et al. (2022) following the responses to Cai et al. (2020)

Systematic bias is one of the major phylogenetic issues arising over the last two decades. Using methods designed to reduce compositional and rate heterogeneity, hence systematic bias, Cai and co-workers (2022) (= CEA22) reanalyzed the DNA sequence dataset for Coleoptera of Zhang et al. (2018) (= ZEA). CEA22 suggest that their phylogenetic results and major evolutionary hypotheses about the Coleoptera should be favoured over other recently published studies. Here, we discuss the methodology of CEA22 with particular attention to how their perfunctory reanalysis of ZEA obfuscates rather than illuminates beetle phylogeny. Similar to published rebuttals of an earlier study of theirs, we specifically find that many of their claims are misleading, unsupported, or false. Critically, CEA22 fail to establish the stated premise for their reanalysis. They fail to demonstrate how composition or rate heterogeneity supposedly impacted the phylogeny estimate of ZEA, let alone the results of other recent studies. Moreover, despite their claim of comprehensive sampling of Coleoptera, their dataset is neither the most diverse with respect to species and higher taxa included, nor anywhere near the largest in terms of sequence data and sampled loci. Although CEA22 does contribute additional fossils for calibration, those seeking the best available estimate for Coleoptera phylogeny and evolution based on molecular data are advised to look elsewhere.

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来源期刊
Systematic Entomology
Systematic Entomology 生物-进化生物学
CiteScore
10.50
自引率
8.30%
发文量
49
审稿时长
>12 weeks
期刊介绍: Systematic Entomology publishes original papers on insect systematics, phylogenetics and integrative taxonomy, with a preference for general interest papers of broad biological, evolutionary or zoogeographical relevance.
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