{"title":"重建分布在印度尼西亚的Alocasia spp.(天南星科)的系统发育以进行优先保护","authors":"N. Asih, I. Erlinawati, Arief Priyadi","doi":"10.11594/jtls.12.03.04","DOIUrl":null,"url":null,"abstract":"Phylogenetic analysis is beneficial to plant conservation prioritization. Conservation does not only deal with species but also their evolutionary potential. A phylogenetic tree is usually reconstructed by using the alignment of DNA sequences. However, with the availability of megatrees, subsetting with a list of species of concern is possible. Here we reconstructed a list of 53 Alocasia spp. (Araceae) from Indonesia and adjacent regions using available megatrees and publicly available DNA sequences in the GenBank. The result showed placed and unplaced Alocasia spp. on the terminal nodes of reconstructed phylogenetic trees. The unplaced species show that publicly available DNA sequences are not yet available, therefore should be prioritized for sequencing. The placed species in the phylogeny could be used for conservation prioritization of these Alocasia spp. Keywords: Alocasia, Indonesia, Megatree, Phylogeny, Plant conservation","PeriodicalId":17638,"journal":{"name":"Journal of Tropical Life Science","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Reconstructing Phylogenies of Alocasia spp. (Araceae) Distributed in Indonesia for Conservation Prioritization\",\"authors\":\"N. Asih, I. Erlinawati, Arief Priyadi\",\"doi\":\"10.11594/jtls.12.03.04\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Phylogenetic analysis is beneficial to plant conservation prioritization. Conservation does not only deal with species but also their evolutionary potential. A phylogenetic tree is usually reconstructed by using the alignment of DNA sequences. However, with the availability of megatrees, subsetting with a list of species of concern is possible. Here we reconstructed a list of 53 Alocasia spp. (Araceae) from Indonesia and adjacent regions using available megatrees and publicly available DNA sequences in the GenBank. The result showed placed and unplaced Alocasia spp. on the terminal nodes of reconstructed phylogenetic trees. The unplaced species show that publicly available DNA sequences are not yet available, therefore should be prioritized for sequencing. The placed species in the phylogeny could be used for conservation prioritization of these Alocasia spp. Keywords: Alocasia, Indonesia, Megatree, Phylogeny, Plant conservation\",\"PeriodicalId\":17638,\"journal\":{\"name\":\"Journal of Tropical Life Science\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-10-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Tropical Life Science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.11594/jtls.12.03.04\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Tropical Life Science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.11594/jtls.12.03.04","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
Reconstructing Phylogenies of Alocasia spp. (Araceae) Distributed in Indonesia for Conservation Prioritization
Phylogenetic analysis is beneficial to plant conservation prioritization. Conservation does not only deal with species but also their evolutionary potential. A phylogenetic tree is usually reconstructed by using the alignment of DNA sequences. However, with the availability of megatrees, subsetting with a list of species of concern is possible. Here we reconstructed a list of 53 Alocasia spp. (Araceae) from Indonesia and adjacent regions using available megatrees and publicly available DNA sequences in the GenBank. The result showed placed and unplaced Alocasia spp. on the terminal nodes of reconstructed phylogenetic trees. The unplaced species show that publicly available DNA sequences are not yet available, therefore should be prioritized for sequencing. The placed species in the phylogeny could be used for conservation prioritization of these Alocasia spp. Keywords: Alocasia, Indonesia, Megatree, Phylogeny, Plant conservation