林地蝾螈Plethodon cinereus与P. electromorphus之间的杂交并不普遍

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Shawn R. Kuchta, M. Hantak, Brian P. Waldron, Cari-Ann M. Hickerson, Richard M. Lehtinen, C. D. Anthony
{"title":"林地蝾螈Plethodon cinereus与P. electromorphus之间的杂交并不普遍","authors":"Shawn R. Kuchta, M. Hantak, Brian P. Waldron, Cari-Ann M. Hickerson, Richard M. Lehtinen, C. D. Anthony","doi":"10.1643/h2021081","DOIUrl":null,"url":null,"abstract":"A recent study reported widespread hybridization between the Eastern Red-backed Salamander (Plethodon cinereus) and the Northern Ravine Salamander (P. electromorphus) in northern Ohio. In this study, DNA sequence data were obtained from three nuclear loci and 20 single nucleotide polymorphisms (SNPs) were identified from the sequences. They found that 48 out of 90 individuals from 13 populations were hybrids, and in some localities every individual possessed an admixed genotype. As these results contradict our observations, and because levels of hybridization impact our interpretation of past and ongoing studies, we revisited the data. First we reanalyzed the original SNPs using STRUCTURE, then we repeated the analysis using haplotypes instead of SNPs. We found that K = 2 was best supported by both analyses, and they agree in recovering lower levels of hybridization than originally reported. For example, five populations in the original study identified as highly admixed or composed entirely of admixed genotypes we found to be pure P. cinereus or to lack evidence of extensive admixture. Similar results were obtained using NEWHYBRIDS and analyses based on gene trees. We conclude that while hybridization between P. cinereus and P. electromorphus occurs, it is much more restricted than originally reported.","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2022-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Hybridization between the Woodland Salamanders Plethodon cinereus and P. electromorphus Is Not Widespread\",\"authors\":\"Shawn R. Kuchta, M. Hantak, Brian P. Waldron, Cari-Ann M. Hickerson, Richard M. Lehtinen, C. D. Anthony\",\"doi\":\"10.1643/h2021081\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"A recent study reported widespread hybridization between the Eastern Red-backed Salamander (Plethodon cinereus) and the Northern Ravine Salamander (P. electromorphus) in northern Ohio. In this study, DNA sequence data were obtained from three nuclear loci and 20 single nucleotide polymorphisms (SNPs) were identified from the sequences. They found that 48 out of 90 individuals from 13 populations were hybrids, and in some localities every individual possessed an admixed genotype. As these results contradict our observations, and because levels of hybridization impact our interpretation of past and ongoing studies, we revisited the data. First we reanalyzed the original SNPs using STRUCTURE, then we repeated the analysis using haplotypes instead of SNPs. We found that K = 2 was best supported by both analyses, and they agree in recovering lower levels of hybridization than originally reported. For example, five populations in the original study identified as highly admixed or composed entirely of admixed genotypes we found to be pure P. cinereus or to lack evidence of extensive admixture. Similar results were obtained using NEWHYBRIDS and analyses based on gene trees. We conclude that while hybridization between P. cinereus and P. electromorphus occurs, it is much more restricted than originally reported.\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2022-08-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1643/h2021081\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1643/h2021081","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

最近的一项研究报告了东部红背蝾螈(Plethodon cinereus)和俄亥俄州北部北部峡谷蝾螈(P. electromorphus)之间的广泛杂交。本研究获得了3个核位点的DNA序列数据,从中鉴定出20个单核苷酸多态性(snp)。他们发现来自13个种群的90个个体中有48个是杂交种,在一些地方,每个个体都具有混合基因型。由于这些结果与我们的观察结果相矛盾,并且由于杂交水平影响了我们对过去和正在进行的研究的解释,我们重新审视了这些数据。首先,我们用STRUCTURE重新分析了原始的SNPs,然后我们用单倍型代替SNPs重复分析。我们发现两种分析都最支持K = 2,并且他们一致认为恢复的杂交水平比最初报道的要低。例如,在最初的研究中,有5个种群被确定为高度混合或完全由混合基因型组成,我们发现它们是纯葡萄球菌或缺乏广泛混合的证据。利用NEWHYBRIDS和基于基因树的分析也得到了类似的结果。我们得出结论,虽然P. cinereus和P. electromorphus之间的杂交发生了,但它比最初报道的要受限制得多。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Hybridization between the Woodland Salamanders Plethodon cinereus and P. electromorphus Is Not Widespread
A recent study reported widespread hybridization between the Eastern Red-backed Salamander (Plethodon cinereus) and the Northern Ravine Salamander (P. electromorphus) in northern Ohio. In this study, DNA sequence data were obtained from three nuclear loci and 20 single nucleotide polymorphisms (SNPs) were identified from the sequences. They found that 48 out of 90 individuals from 13 populations were hybrids, and in some localities every individual possessed an admixed genotype. As these results contradict our observations, and because levels of hybridization impact our interpretation of past and ongoing studies, we revisited the data. First we reanalyzed the original SNPs using STRUCTURE, then we repeated the analysis using haplotypes instead of SNPs. We found that K = 2 was best supported by both analyses, and they agree in recovering lower levels of hybridization than originally reported. For example, five populations in the original study identified as highly admixed or composed entirely of admixed genotypes we found to be pure P. cinereus or to lack evidence of extensive admixture. Similar results were obtained using NEWHYBRIDS and analyses based on gene trees. We conclude that while hybridization between P. cinereus and P. electromorphus occurs, it is much more restricted than originally reported.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信