A. Perrillat-Mercerot, N. Deliot, A. Miranville, R. Guillevin, B. Constantin
{"title":"膜转运体动力学的数学分析:钙通量案例研究","authors":"A. Perrillat-Mercerot, N. Deliot, A. Miranville, R. Guillevin, B. Constantin","doi":"10.1007/s10441-022-09437-3","DOIUrl":null,"url":null,"abstract":"<div><p>A tight control of intracellular [Ca<span>\\(^{2+}\\)</span>] is essential for the survival and normal function of cells. In this study we investigate key mechanistic steps by which calcium is regulated and calcium oscillations could occur using in silico modeling of membrane transporters. To do so we give a deterministic description of intracellular Ca<span>\\(^{2+}\\)</span> dynamics using nonlinear dynamics in order to understand Ca<span>\\(^{2+}\\)</span> signaling. We first present the ordinary differential equations (ODEs) system for cell calcium kinetics and make a preliminary work on Sobol indices. We then describe and analyze complex transporters action. Besides, we analyze the whole system. We finally perform numerical simulations and compare our results to real data.</p></div>","PeriodicalId":7057,"journal":{"name":"Acta Biotheoretica","volume":"70 2","pages":""},"PeriodicalIF":1.4000,"publicationDate":"2022-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Mathematical Analysis of Membrane Transporters Dynamics: A Calcium Fluxes Case Study\",\"authors\":\"A. Perrillat-Mercerot, N. Deliot, A. Miranville, R. Guillevin, B. Constantin\",\"doi\":\"10.1007/s10441-022-09437-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A tight control of intracellular [Ca<span>\\\\(^{2+}\\\\)</span>] is essential for the survival and normal function of cells. In this study we investigate key mechanistic steps by which calcium is regulated and calcium oscillations could occur using in silico modeling of membrane transporters. To do so we give a deterministic description of intracellular Ca<span>\\\\(^{2+}\\\\)</span> dynamics using nonlinear dynamics in order to understand Ca<span>\\\\(^{2+}\\\\)</span> signaling. We first present the ordinary differential equations (ODEs) system for cell calcium kinetics and make a preliminary work on Sobol indices. We then describe and analyze complex transporters action. Besides, we analyze the whole system. We finally perform numerical simulations and compare our results to real data.</p></div>\",\"PeriodicalId\":7057,\"journal\":{\"name\":\"Acta Biotheoretica\",\"volume\":\"70 2\",\"pages\":\"\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2022-04-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Biotheoretica\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10441-022-09437-3\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Biotheoretica","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10441-022-09437-3","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
Mathematical Analysis of Membrane Transporters Dynamics: A Calcium Fluxes Case Study
A tight control of intracellular [Ca\(^{2+}\)] is essential for the survival and normal function of cells. In this study we investigate key mechanistic steps by which calcium is regulated and calcium oscillations could occur using in silico modeling of membrane transporters. To do so we give a deterministic description of intracellular Ca\(^{2+}\) dynamics using nonlinear dynamics in order to understand Ca\(^{2+}\) signaling. We first present the ordinary differential equations (ODEs) system for cell calcium kinetics and make a preliminary work on Sobol indices. We then describe and analyze complex transporters action. Besides, we analyze the whole system. We finally perform numerical simulations and compare our results to real data.
期刊介绍:
Acta Biotheoretica is devoted to the promotion of theoretical biology, encompassing mathematical biology and the philosophy of biology, paying special attention to the methodology of formation of biological theory.
Papers on all kind of biological theories are welcome. Interesting subjects include philosophy of biology, biomathematics, computational biology, genetics, ecology and morphology. The process of theory formation can be presented in verbal or mathematical form. Moreover, purely methodological papers can be devoted to the historical origins of the philosophy underlying biological theories and concepts.
Papers should contain clear statements of biological assumptions, and where applicable, a justification of their translation into mathematical form and a detailed discussion of the mathematical treatment. The connection to empirical data should be clarified.
Acta Biotheoretica also welcomes critical book reviews, short comments on previous papers and short notes directing attention to interesting new theoretical ideas.