利用超保守元件研究大黄蜂鲶鱼的系统发育基因组学

IF 2 2区 生物学 Q3 EVOLUTIONARY BIOLOGY
Gabriel S. C. Silva, Bruno F. Melo, Fábio F. Roxo, Luz E. Ochoa, Oscar A. Shibatta, Mark H. Sabaj, Claudio Oliveira
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引用次数: 6

摘要

新热带鲇鱼属7属53种,广泛分布于南美洲,从哥伦比亚西北部和委内瑞拉到阿根廷和乌拉圭。基于形态系统发育的属间关系是相互冲突的,种间关系仍处于初级阶段。通过对33份假拟蚊科标本和19个相关分类群的基因组超保守元件(UCEs)序列数据的分析,进行了该科的首次分子系统发育。系统发育关系通过使用贝叶斯推理和最大似然的串联矩阵和物种树分析的聚结方法来获取。868个UCE位点和906,689 bp的系统发育有力地支持了拟鸡科的单一性,并将其划分为拟鸡亚科和新提出的蝙蝠亚科两个主要亚支。pseudoopimelodinae是由pseudoopimelodus和Rhyacoglanis的姐妹科Cruciglanis组成,而batrochoglanae则是由Batrochoglanis和Microglanis的姐妹科cephalalosilurus和Lophiosilurus组成。pseudoopimelodinae由5个形态学突触支持,Batrochoglaninae由3个形态学突触支持。本研究的结果必将指导未来旨在划分和描述单系群内物种的研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements

Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements

Neotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups.

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来源期刊
CiteScore
5.60
自引率
0.00%
发文量
13
审稿时长
>12 weeks
期刊介绍: The Journal of Zoological Systematics and Evolutionary Research (JZSER)is a peer-reviewed, international forum for publication of high-quality research on systematic zoology and evolutionary biology. The aim of the journal is to provoke a synthesis of results from morphology, physiology, animal geography, ecology, ethology, evolutionary genetics, population genetics, developmental biology and molecular biology. Besides empirical papers, theoretical contributions and review articles are welcome. Integrative and interdisciplinary contributions are particularly preferred. Purely taxonomic and predominantly cytogenetic manuscripts will not be accepted except in rare cases, and then only at the Editor-in-Chief''s discretion. The same is true for phylogenetic studies based solely on mitochondrial marker sequences without any additional methodological approach. To encourage scientific exchange and discussions, authors are invited to send critical comments on previously published articles. Only papers in English language are accepted.
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