一种通过拉曼光谱检测大肠癌癌症的深度学习方法。

IF 5 Q1 ENGINEERING, BIOMEDICAL
BME frontiers Pub Date : 2022-04-07 eCollection Date: 2022-01-01 DOI:10.34133/2022/9872028
Zheng Cao, Xiang Pan, Hongyun Yu, Shiyuan Hua, Da Wang, Danny Z Chen, Min Zhou, Jian Wu
{"title":"一种通过拉曼光谱检测大肠癌癌症的深度学习方法。","authors":"Zheng Cao,&nbsp;Xiang Pan,&nbsp;Hongyun Yu,&nbsp;Shiyuan Hua,&nbsp;Da Wang,&nbsp;Danny Z Chen,&nbsp;Min Zhou,&nbsp;Jian Wu","doi":"10.34133/2022/9872028","DOIUrl":null,"url":null,"abstract":"<p><p><i>Objective and Impact Statement.</i> Distinguishing tumors from normal tissues is vital in the intraoperative diagnosis and pathological examination. In this work, we propose to utilize Raman spectroscopy as a novel modality in surgery to detect colorectal cancer tissues. <i>Introduction.</i> Raman spectra can reflect the substance components of the target tissues. However, the feature peak is slight and hard to detect due to environmental noise. Collecting a high-quality Raman spectroscopy dataset and developing effective deep learning detection methods are possibly viable approaches. <i>Methods.</i> First, we collect a large Raman spectroscopy dataset from 26 colorectal cancer patients with the Raman shift ranging from 385 to 1545 cm<math><msup><mrow><mtext> </mtext></mrow><mrow><mo>-</mo><mn>1</mn></mrow></msup></math>. Second, a one-dimensional residual convolutional neural network (1D-ResNet) architecture is designed to classify the tumor tissues of colorectal cancer. Third, we visualize and interpret the fingerprint peaks found by our deep learning model. <i>Results.</i> Experimental results show that our deep learning method achieves 98.5% accuracy in the detection of colorectal cancer and outperforms traditional methods. <i>Conclusion.</i> Overall, Raman spectra are a novel modality for clinical detection of colorectal cancer. Our proposed ensemble 1D-ResNet could effectively classify the Raman spectra obtained from colorectal tumor tissues or normal tissues.</p>","PeriodicalId":72430,"journal":{"name":"BME frontiers","volume":"2022 ","pages":"9872028"},"PeriodicalIF":5.0000,"publicationDate":"2022-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521640/pdf/","citationCount":"10","resultStr":"{\"title\":\"A Deep Learning Approach for Detecting Colorectal Cancer via Raman Spectra.\",\"authors\":\"Zheng Cao,&nbsp;Xiang Pan,&nbsp;Hongyun Yu,&nbsp;Shiyuan Hua,&nbsp;Da Wang,&nbsp;Danny Z Chen,&nbsp;Min Zhou,&nbsp;Jian Wu\",\"doi\":\"10.34133/2022/9872028\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Objective and Impact Statement.</i> Distinguishing tumors from normal tissues is vital in the intraoperative diagnosis and pathological examination. In this work, we propose to utilize Raman spectroscopy as a novel modality in surgery to detect colorectal cancer tissues. <i>Introduction.</i> Raman spectra can reflect the substance components of the target tissues. However, the feature peak is slight and hard to detect due to environmental noise. Collecting a high-quality Raman spectroscopy dataset and developing effective deep learning detection methods are possibly viable approaches. <i>Methods.</i> First, we collect a large Raman spectroscopy dataset from 26 colorectal cancer patients with the Raman shift ranging from 385 to 1545 cm<math><msup><mrow><mtext> </mtext></mrow><mrow><mo>-</mo><mn>1</mn></mrow></msup></math>. Second, a one-dimensional residual convolutional neural network (1D-ResNet) architecture is designed to classify the tumor tissues of colorectal cancer. Third, we visualize and interpret the fingerprint peaks found by our deep learning model. <i>Results.</i> Experimental results show that our deep learning method achieves 98.5% accuracy in the detection of colorectal cancer and outperforms traditional methods. <i>Conclusion.</i> Overall, Raman spectra are a novel modality for clinical detection of colorectal cancer. Our proposed ensemble 1D-ResNet could effectively classify the Raman spectra obtained from colorectal tumor tissues or normal tissues.</p>\",\"PeriodicalId\":72430,\"journal\":{\"name\":\"BME frontiers\",\"volume\":\"2022 \",\"pages\":\"9872028\"},\"PeriodicalIF\":5.0000,\"publicationDate\":\"2022-04-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521640/pdf/\",\"citationCount\":\"10\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"BME frontiers\",\"FirstCategoryId\":\"1087\",\"ListUrlMain\":\"https://doi.org/10.34133/2022/9872028\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"BME frontiers","FirstCategoryId":"1087","ListUrlMain":"https://doi.org/10.34133/2022/9872028","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 10

摘要

目标和影响声明。区分肿瘤和正常组织在术中诊断和病理检查中至关重要。在这项工作中,我们建议利用拉曼光谱作为一种新的手术方式来检测结直肠癌癌症组织。介绍拉曼光谱可以反映目标组织的物质成分。然而,由于环境噪声,特征峰值是轻微的并且难以检测。收集高质量的拉曼光谱数据集和开发有效的深度学习检测方法可能是可行的方法。方法。首先,我们从26名癌症结直肠癌患者中收集了一个大型拉曼光谱数据集,拉曼位移范围在385到1545之间 厘米 -1.其次,设计了一种一维残差卷积神经网络(1D-ResNet)结构,对癌症肿瘤组织进行分类。第三,我们对深度学习模型发现的指纹峰值进行可视化和解释。后果实验结果表明,我们的深度学习方法在癌症检测中的准确率达到98.5%,优于传统方法。结论总的来说,拉曼光谱是一种用于癌症临床检测的新模式。我们提出的集成1D ResNet可以有效地对从结直肠癌组织或正常组织获得的拉曼光谱进行分类。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Deep Learning Approach for Detecting Colorectal Cancer via Raman Spectra.

A Deep Learning Approach for Detecting Colorectal Cancer via Raman Spectra.

A Deep Learning Approach for Detecting Colorectal Cancer via Raman Spectra.

A Deep Learning Approach for Detecting Colorectal Cancer via Raman Spectra.

Objective and Impact Statement. Distinguishing tumors from normal tissues is vital in the intraoperative diagnosis and pathological examination. In this work, we propose to utilize Raman spectroscopy as a novel modality in surgery to detect colorectal cancer tissues. Introduction. Raman spectra can reflect the substance components of the target tissues. However, the feature peak is slight and hard to detect due to environmental noise. Collecting a high-quality Raman spectroscopy dataset and developing effective deep learning detection methods are possibly viable approaches. Methods. First, we collect a large Raman spectroscopy dataset from 26 colorectal cancer patients with the Raman shift ranging from 385 to 1545 cm-1. Second, a one-dimensional residual convolutional neural network (1D-ResNet) architecture is designed to classify the tumor tissues of colorectal cancer. Third, we visualize and interpret the fingerprint peaks found by our deep learning model. Results. Experimental results show that our deep learning method achieves 98.5% accuracy in the detection of colorectal cancer and outperforms traditional methods. Conclusion. Overall, Raman spectra are a novel modality for clinical detection of colorectal cancer. Our proposed ensemble 1D-ResNet could effectively classify the Raman spectra obtained from colorectal tumor tissues or normal tissues.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
7.10
自引率
0.00%
发文量
0
审稿时长
16 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信