{"title":"日本Pyrofolis japonicus gen.nov.sp.nov.,是从伊河垭北部热液区分离得到的一个新的火管科成员。","authors":"Urara Miyazaki, Masaru Sanari, Akihiro Tame, Masaaki Kitajima, Akihiro Okamoto, Shigeki Sawayama, Junichi Miyazaki, Ken Takai, Satoshi Nakagawa","doi":"10.1007/s00792-023-01316-0","DOIUrl":null,"url":null,"abstract":"<p><p>A novel hyperthermophilic, heterotrophic archaeon, strain YC29<sup>T</sup>, was isolated from a deep-sea hydrothermal vent in the Mid-Okinawa Trough, Japan. Cells of strain YC29<sup>T</sup> were non-motile, irregular cocci with diameters of 1.2-3.0 µm. The strain was an obligatory fermentative anaerobe capable of growth on complex proteinaceous substrates. Growth was observed between 85 and 100 °C (optimum 90-95 °C), pH 4.9-6.4 (optimum 5.1), and in the presence of 1.4-4.0% (w/v) NaCl (optimum 3.0%). Inorganic carbon was required as a carbon source. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the family Pyrodictiaceae. The genome size was 2.02 Mbp with a G+C content of 49.4%. The maximum values for average nucleotide identity (ANI), average amino acid identity (AAI), and in silico DNA-DNA hybridization (dDDH) value of strain YC29<sup>T</sup> with relatives were 67.9% (with Pyrodictium abyssi strain AV2<sup>T</sup>), 61.1% (with Pyrodictium occultum strain PL-19<sup>T</sup>), and 33.8% (with Pyrolobus fumarii strain 1A<sup>T</sup>), respectively. Based on the phylogenetic, genomic, and phenotypic characteristics, we propose that strain YC29<sup>T</sup> represents a novel genus and species, Pyrofollis japonicus gen. nov., sp. (type strain YC29<sup>T</sup> = DSM 113394<sup>T</sup> = JCM 39171<sup>T</sup>).</p>","PeriodicalId":12302,"journal":{"name":"Extremophiles","volume":"27 3","pages":"28"},"PeriodicalIF":2.6000,"publicationDate":"2023-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Pyrofollis japonicus gen. nov. sp. nov., a novel member of the family Pyrodictiaceae isolated from the Iheya North hydrothermal field.\",\"authors\":\"Urara Miyazaki, Masaru Sanari, Akihiro Tame, Masaaki Kitajima, Akihiro Okamoto, Shigeki Sawayama, Junichi Miyazaki, Ken Takai, Satoshi Nakagawa\",\"doi\":\"10.1007/s00792-023-01316-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A novel hyperthermophilic, heterotrophic archaeon, strain YC29<sup>T</sup>, was isolated from a deep-sea hydrothermal vent in the Mid-Okinawa Trough, Japan. Cells of strain YC29<sup>T</sup> were non-motile, irregular cocci with diameters of 1.2-3.0 µm. The strain was an obligatory fermentative anaerobe capable of growth on complex proteinaceous substrates. Growth was observed between 85 and 100 °C (optimum 90-95 °C), pH 4.9-6.4 (optimum 5.1), and in the presence of 1.4-4.0% (w/v) NaCl (optimum 3.0%). Inorganic carbon was required as a carbon source. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the family Pyrodictiaceae. The genome size was 2.02 Mbp with a G+C content of 49.4%. The maximum values for average nucleotide identity (ANI), average amino acid identity (AAI), and in silico DNA-DNA hybridization (dDDH) value of strain YC29<sup>T</sup> with relatives were 67.9% (with Pyrodictium abyssi strain AV2<sup>T</sup>), 61.1% (with Pyrodictium occultum strain PL-19<sup>T</sup>), and 33.8% (with Pyrolobus fumarii strain 1A<sup>T</sup>), respectively. Based on the phylogenetic, genomic, and phenotypic characteristics, we propose that strain YC29<sup>T</sup> represents a novel genus and species, Pyrofollis japonicus gen. nov., sp. (type strain YC29<sup>T</sup> = DSM 113394<sup>T</sup> = JCM 39171<sup>T</sup>).</p>\",\"PeriodicalId\":12302,\"journal\":{\"name\":\"Extremophiles\",\"volume\":\"27 3\",\"pages\":\"28\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2023-10-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Extremophiles\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s00792-023-01316-0\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Extremophiles","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s00792-023-01316-0","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Pyrofollis japonicus gen. nov. sp. nov., a novel member of the family Pyrodictiaceae isolated from the Iheya North hydrothermal field.
A novel hyperthermophilic, heterotrophic archaeon, strain YC29T, was isolated from a deep-sea hydrothermal vent in the Mid-Okinawa Trough, Japan. Cells of strain YC29T were non-motile, irregular cocci with diameters of 1.2-3.0 µm. The strain was an obligatory fermentative anaerobe capable of growth on complex proteinaceous substrates. Growth was observed between 85 and 100 °C (optimum 90-95 °C), pH 4.9-6.4 (optimum 5.1), and in the presence of 1.4-4.0% (w/v) NaCl (optimum 3.0%). Inorganic carbon was required as a carbon source. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate was a member of the family Pyrodictiaceae. The genome size was 2.02 Mbp with a G+C content of 49.4%. The maximum values for average nucleotide identity (ANI), average amino acid identity (AAI), and in silico DNA-DNA hybridization (dDDH) value of strain YC29T with relatives were 67.9% (with Pyrodictium abyssi strain AV2T), 61.1% (with Pyrodictium occultum strain PL-19T), and 33.8% (with Pyrolobus fumarii strain 1AT), respectively. Based on the phylogenetic, genomic, and phenotypic characteristics, we propose that strain YC29T represents a novel genus and species, Pyrofollis japonicus gen. nov., sp. (type strain YC29T = DSM 113394T = JCM 39171T).
期刊介绍:
Extremophiles features original research articles, reviews, and method papers on the biology, molecular biology, structure, function, and applications of microbial life at high or low temperature, pressure, acidity, alkalinity, salinity, or desiccation; or in the presence of organic solvents, heavy metals, normally toxic substances, or radiation.