大规模的基因组数据揭示了猫头鹰蛾(夜蛾总科)的系统发育和进化。

IF 3.9 2区 生物学 Q1 EVOLUTIONARY BIOLOGY
Cladistics Pub Date : 2023-10-03 DOI:10.1111/cla.12559
Xuankun Li, Jesse W. Breinholt, Jose I. Martinez, Kevin Keegan, Emily A. Ellis, Nicholas T. Homziak, Andreas Zwick, Caroline G. Storer, Duane McKenna, Akito Y. Kawahara
{"title":"大规模的基因组数据揭示了猫头鹰蛾(夜蛾总科)的系统发育和进化。","authors":"Xuankun Li,&nbsp;Jesse W. Breinholt,&nbsp;Jose I. Martinez,&nbsp;Kevin Keegan,&nbsp;Emily A. Ellis,&nbsp;Nicholas T. Homziak,&nbsp;Andreas Zwick,&nbsp;Caroline G. Storer,&nbsp;Duane McKenna,&nbsp;Akito Y. Kawahara","doi":"10.1111/cla.12559","DOIUrl":null,"url":null,"abstract":"<p>The owlet moths (Noctuoidea; ~43–45K described species) are one of the most ecologically diverse and speciose superfamilies of animals. Moreover, they comprise some of the world's most notorious pests of agriculture and forestry. Despite their contributions to terrestrial biodiversity and impacts on ecosystems and economies, the evolutionary history of Noctuoidea remains unclear because the superfamily lacks a statistically robust phylogenetic and temporal framework. We reconstructed the phylogeny of Noctuoidea using data from 1234 genes (946.4 kb nucleotides) obtained from the genome and transcriptome sequences of 76 species. The relationships among the six families of Noctuoidea were well resolved and consistently recovered based on both concatenation and gene coalescence approaches, supporting the following relationships: Oenosandridae + (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). A Yule tree prior with three unlinked molecular clocks was identified as the preferred BEAST analysis using marginal-likelihood estimations. The crown age of Noctuoidea was estimated at 74.5 Ma, with most families originating before the end of the Paleogene (23 Ma). Our study provides the first statistically robust phylogenetic and temporal framework for Noctuoidea, including all families of owlet moths, based on large-scale genomic data.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"40 1","pages":"21-33"},"PeriodicalIF":3.9000,"publicationDate":"2023-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Large-scale genomic data reveal the phylogeny and evolution of owlet moths (Noctuoidea)\",\"authors\":\"Xuankun Li,&nbsp;Jesse W. Breinholt,&nbsp;Jose I. Martinez,&nbsp;Kevin Keegan,&nbsp;Emily A. Ellis,&nbsp;Nicholas T. Homziak,&nbsp;Andreas Zwick,&nbsp;Caroline G. Storer,&nbsp;Duane McKenna,&nbsp;Akito Y. Kawahara\",\"doi\":\"10.1111/cla.12559\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The owlet moths (Noctuoidea; ~43–45K described species) are one of the most ecologically diverse and speciose superfamilies of animals. Moreover, they comprise some of the world's most notorious pests of agriculture and forestry. Despite their contributions to terrestrial biodiversity and impacts on ecosystems and economies, the evolutionary history of Noctuoidea remains unclear because the superfamily lacks a statistically robust phylogenetic and temporal framework. We reconstructed the phylogeny of Noctuoidea using data from 1234 genes (946.4 kb nucleotides) obtained from the genome and transcriptome sequences of 76 species. The relationships among the six families of Noctuoidea were well resolved and consistently recovered based on both concatenation and gene coalescence approaches, supporting the following relationships: Oenosandridae + (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). A Yule tree prior with three unlinked molecular clocks was identified as the preferred BEAST analysis using marginal-likelihood estimations. The crown age of Noctuoidea was estimated at 74.5 Ma, with most families originating before the end of the Paleogene (23 Ma). Our study provides the first statistically robust phylogenetic and temporal framework for Noctuoidea, including all families of owlet moths, based on large-scale genomic data.</p>\",\"PeriodicalId\":50688,\"journal\":{\"name\":\"Cladistics\",\"volume\":\"40 1\",\"pages\":\"21-33\"},\"PeriodicalIF\":3.9000,\"publicationDate\":\"2023-10-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Cladistics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/cla.12559\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"EVOLUTIONARY BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Cladistics","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/cla.12559","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

猫头鹰蛾(夜蛾总科;约43-45K描述的物种)是生态多样性和物种性最强的动物超科之一。此外,它们还包括一些世界上最臭名昭著的农业和林业害虫。尽管它们对陆地生物多样性做出了贡献,并对生态系统和经济产生了影响,但夜蛾总科的进化史仍不清楚,因为该超科缺乏统计上稳健的系统发育和时间框架。我们利用1234个基因(946.4 kb核苷酸)。Noctuoidea的六个家族之间的关系得到了很好的解决,并基于串联和基因合并的方法得到了一致的恢复,支持了以下关系:Oenosandridae + (牙形石科 + (Erebidae + (Nolidae + (真蝇科 + 夜蛾科)))。使用边际似然估计,具有三个未链接分子时钟的Yule树先验被确定为优选的BEAST分析。夜蛾总科的冠龄估计为74.5岁 马,大多数家族起源于古近纪末期之前(23 马)。我们的研究基于大规模基因组数据,为夜蛾总科(包括所有猫头鹰蛾科)提供了第一个统计上稳健的系统发育和时间框架。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Large-scale genomic data reveal the phylogeny and evolution of owlet moths (Noctuoidea)

The owlet moths (Noctuoidea; ~43–45K described species) are one of the most ecologically diverse and speciose superfamilies of animals. Moreover, they comprise some of the world's most notorious pests of agriculture and forestry. Despite their contributions to terrestrial biodiversity and impacts on ecosystems and economies, the evolutionary history of Noctuoidea remains unclear because the superfamily lacks a statistically robust phylogenetic and temporal framework. We reconstructed the phylogeny of Noctuoidea using data from 1234 genes (946.4 kb nucleotides) obtained from the genome and transcriptome sequences of 76 species. The relationships among the six families of Noctuoidea were well resolved and consistently recovered based on both concatenation and gene coalescence approaches, supporting the following relationships: Oenosandridae + (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). A Yule tree prior with three unlinked molecular clocks was identified as the preferred BEAST analysis using marginal-likelihood estimations. The crown age of Noctuoidea was estimated at 74.5 Ma, with most families originating before the end of the Paleogene (23 Ma). Our study provides the first statistically robust phylogenetic and temporal framework for Noctuoidea, including all families of owlet moths, based on large-scale genomic data.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Cladistics
Cladistics 生物-进化生物学
CiteScore
8.60
自引率
5.60%
发文量
34
期刊介绍: Cladistics publishes high quality research papers on systematics, encouraging debate on all aspects of the field, from philosophy, theory and methodology to empirical studies and applications in biogeography, coevolution, conservation biology, ontogeny, genomics and paleontology. Cladistics is read by scientists working in the research fields of evolution, systematics and integrative biology and enjoys a consistently high position in the ISI® rankings for evolutionary biology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信