对低级别胶质瘤中误噬相关分类和特征的新认识。

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
International Journal of Genomics Pub Date : 2022-11-14 eCollection Date: 2022-01-01 DOI:10.1155/2022/6465760
Xi-Feng Qian, Jia-Hao Zhang, Yue-Xue Mai, Xin Yin, Yu-Bin Zheng, Zi-Yuan Yu, Guo-Dong Zhu, Xu-Guang Guo
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引用次数: 1

摘要

低级别胶质瘤(LGG)是最常见的颅内恶性肿瘤,容易发展为高级别胶质瘤并增加耐药性。细胞旁凋亡被定义为一种非凋亡形式的程序性细胞死亡,它逐渐被关注于胶质瘤患者,以开发治疗方案。然而,细胞凋亡在LGG中的具体作用及其相关性尚不清楚。在本研究中,我们首先建立了新的LGG患者基于眩晕的预后模型。我们从The Cancer Genome Atlas数据库中获取LGG患者的相关数据,通过一致聚类分析,我们发现LGG患者可以根据paraptosis分为三个不同的聚类。通过最小绝对收缩和选择算子回归分析及多变量Cox回归分析,鉴定出10个凋亡相关基因(PRG)特征(CDK4、TNK2、DSTYK、CDKN3、CCR4、CASP9、HSPA5、RGR、LPAR1、PDCD6IP),成功将LGG患者划分为高、低风险亚组。Kaplan-Meier分析和时间相关的受者操作特征显示,预测总生存期(OS)的性能非常高。利用中国胶质瘤基因组图谱和基因表达综合数据库对平行结果进行了再现和验证。独立预后分析和nomogram构建提示风险评分可以作为预测OS的独立因素。富集分析表明,高危人群免疫相关生物过程普遍富集,不同免疫状态高度浸润。我们还证实了10-PRG特征与fda批准药物的药物敏感性之间的潜在关系。综上所述,我们的研究结果为进一步探索PRG特征在LGG中的作用提供了新的认识和重要方向。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas.

A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas.

A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas.

A Novel Insight into Paraptosis-Related Classification and Signature in Lower-Grade Gliomas.

Lower-grade gliomas (LGG) are the most common intracranial malignancies that readily evolve to high-grade gliomas and increase drug resistance. Paraptosis is defined as a nonapoptotic form of programmed cell death, which is gradually focused on patients with gliomas to develop treatment options. However, the specific role of paraptosis in LGG and its correlation is still vague. In this study, we first establish the novel paraptosis-based prognostic model for LGG patients. The relevant data of LGG patients were acquired from The Cancer Genome Atlas database, and we found that LGG patients could be divided into three different clusters based on paraptosis via consensus cluster analysis. Through least absolute shrinkage and selection operator regression analysis and multivariate Cox regression analysis, 10-paraptosis-related gene (PRG) signatures (CDK4, TNK2, DSTYK, CDKN3, CCR4, CASP9, HSPA5, RGR, LPAR1, and PDCD6IP) were identified to separate LGG patients into high- and low-risk subgroups successfully. The Kaplan-Meier analysis and time-dependent receiver-operating characteristic showed that the performances of predicting overall survival (OS) were dramatically high. The parallel results were reappeared and verified by using the Chinese Glioma Genome Atlas and Gene Expression Omnibus databases. Independent prognostic analysis and nomogram construction implied that risk scores could be considered the independent factor to predict OS. Enrichment analysis indicated that immune-related biological processes were generally enriched, and different immune statuses were highly infiltrated in high-risk group. We also confirmed the potential relationship of 10-PRG signatures and drug sensitivity of Food and Drug Administration-approved drugs. In summary, our findings provide a novel knowledge of paraptosis status and crucial direction to further explore the role of PRG signatures in LGG.

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来源期刊
International Journal of Genomics
International Journal of Genomics BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOTECHNOLOGY & APPLIED MICROBIOLOGY
CiteScore
5.40
自引率
0.00%
发文量
33
审稿时长
17 weeks
期刊介绍: International Journal of Genomics is a peer-reviewed, Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics covered by the journal include, but are not limited to: bioinformatics, clinical genomics, disease genomics, epigenomics, evolutionary genomics, functional genomics, genome engineering, and synthetic genomics.
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