A O Tokareva, V V Chagovets, N L Starodubtseva, V V Rodionov, V V Kometova, K S Chingin, V E Frankevich
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引用次数: 0
摘要
肿瘤的分子特征与其组织学类型相关,可用于研究肿瘤进展机制和诊断肿瘤。在这项工作中,在恶性乳腺肿瘤和邻近组织脂质谱的变化进行了研究。通过其脂质谱来确定肿瘤组织学类型的潜在可能性进行了评估。采用反相色谱-质谱法对脂质提取物组织进行脂质谱分析,并通过特征片段对脂质进行鉴定。采用Kruskal-Wallis试验测定肿瘤组织学类型的潜在脂质标志物。脂质标志物的影响由MetaboAnalyst计算。采用线性核和1 vs 1结构的支持向量机建立分类模型。模型采用留一交叉验证法进行验证。基于微环境组织的模型准确率分别为99%和75%,基于肿瘤组织的模型正离子模式和负离子模式的准确率分别为90%和40%。边缘(邻近)组织的脂质谱可用于鉴别乳腺癌的组织学类型。相邻组织和肿瘤组织中甘油磷脂代谢途径的改变具有统计学意义。
[Lipidomic markers of breast cancer malignant tumor histological types].
The molecular profile of a tumor is associated with its histological type and can be used both to study the mechanisms of tumor progression and to diagnose it. In this work, changes in the lipid profile of a malignant breast tumor and the adjacent tissue were studied. The potential possibility of determining the histological type of the tumor by its lipid profile was evaluated. Lipid profiling was performed by reverse-phase chromato-mass-spectrometric analysis the tissue of lipid extract with identification of lipids by characteristic fragments. Potential lipid markers of the histological type of tumor were determined using the Kruskal-Wallis test. Impact of lipid markers was calculated by MetaboAnalyst. Classification models were built by support vector machines with linear kernel and 1-vs-1 architecture. Models were validated by leave-one out cross-validation. Accuracy of models based on microenvironment tissue, were 99% and 75%, accuracy of models, based on tumor tissue, were 90% and 40% for the positive ion mode and negative ion mode respectively. The lipid profile of marginal (adjacent) tissue can be used for identification histological types of breast cancer. Glycerophospholipid metabolism pathway changes were statistically significant in the adjacent tissue and tumor tissue.
Biomeditsinskaya khimiyaBiochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
CiteScore
1.30
自引率
0.00%
发文量
49
期刊介绍:
The aim of the Russian-language journal "Biomeditsinskaya Khimiya" (Biomedical Chemistry) is to introduce the latest results obtained by scientists from Russia and other Republics of the Former Soviet Union. The Journal will cover all major areas of Biomedical chemistry, including neurochemistry, clinical chemistry, molecular biology of pathological processes, gene therapy, development of new drugs and their biochemical pharmacology, introduction and advertisement of new (biochemical) methods into experimental and clinical medicine etc. The Journal also publish review articles. All issues of journal usually contain invited reviews. Papers written in Russian contain abstract (in English).