用系统生物学图形符号表示系统生物学信息的设计考虑。

IF 1.5 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY

Journal of Integrative Bioinformatics Pub Date : 2022-07-04 DOI:10.1515/jib-2022-0024

Falk Schreiber, Tobias Czauderna

{"title":"用系统生物学图形符号表示系统生物学信息的设计考虑。","authors":"Falk Schreiber, Tobias Czauderna","doi":"10.1515/jib-2022-0024","DOIUrl":null,"url":null,"abstract":"Visual representations are commonly used to explore, analyse, and communicate information and knowledge in systems biology and beyond. Such visualisations not only need to be accurate but should also be aesthetically pleasing and informative. Using the example of the Systems Biology Graphical Notation (SBGN) we will investigate design considerations for graphically presenting information from systems biology, in particular regarding the use of glyphs for types of information, the style of graph layout for network representation, and the concept of bricks for visual network creation.","PeriodicalId":53625,"journal":{"name":"Journal of Integrative Bioinformatics","volume":null,"pages":null},"PeriodicalIF":1.5000,"publicationDate":"2022-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9377698/pdf/","citationCount":"1","resultStr":"{\"title\":\"Design considerations for representing systems biology information with the Systems Biology Graphical Notation.\",\"authors\":\"Falk Schreiber, Tobias Czauderna\",\"doi\":\"10.1515/jib-2022-0024\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Visual representations are commonly used to explore, analyse, and communicate information and knowledge in systems biology and beyond. Such visualisations not only need to be accurate but should also be aesthetically pleasing and informative. Using the example of the Systems Biology Graphical Notation (SBGN) we will investigate design considerations for graphically presenting information from systems biology, in particular regarding the use of glyphs for types of information, the style of graph layout for network representation, and the concept of bricks for visual network creation.\",\"PeriodicalId\":53625,\"journal\":{\"name\":\"Journal of Integrative Bioinformatics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2022-07-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9377698/pdf/\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Integrative Bioinformatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1515/jib-2022-0024\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Integrative Bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1515/jib-2022-0024","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}

引用次数: 1

摘要

在系统生物学和其他领域，视觉表示通常用于探索、分析和交流信息和知识。这样的可视化不仅需要准确，而且还应该美观和信息丰富。以系统生物学图形符号(SBGN)为例，我们将研究以图形方式呈现系统生物学信息的设计考虑因素，特别是关于信息类型的字形使用，网络表示的图形布局风格，以及用于视觉网络创建的砖块概念。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

Design considerations for representing systems biology information with the Systems Biology Graphical Notation.

查看原文本刊更多论文

Design considerations for representing systems biology information with the Systems Biology Graphical Notation.

Visual representations are commonly used to explore, analyse, and communicate information and knowledge in systems biology and beyond. Such visualisations not only need to be accurate but should also be aesthetically pleasing and informative. Using the example of the Systems Biology Graphical Notation (SBGN) we will investigate design considerations for graphically presenting information from systems biology, in particular regarding the use of glyphs for types of information, the style of graph layout for network representation, and the concept of bricks for visual network creation.

求助全文

通过发布文献求助，成功后即可免费获取论文全文。去求助

来源期刊

Journal of Integrative Bioinformatics Medicine-Medicine (all)

CiteScore

3.10

自引率

5.30%

发文量

审稿时长

12 weeks