Hovik Panosyan, Franziska R Traube, Caterina Brandmayr, Mirko Wagner, Thomas Carell
{"title":"专性和中度嗜热杆菌的tRNA修饰谱。","authors":"Hovik Panosyan, Franziska R Traube, Caterina Brandmayr, Mirko Wagner, Thomas Carell","doi":"10.1007/s00792-022-01258-z","DOIUrl":null,"url":null,"abstract":"<p><p>Transfer RNAs (tRNAs) are the most ancient RNA molecules in the cell, modification pattern of which is linked to phylogeny. The aim of this study was to determine the tRNA modification profiles of obligate (Anoxybacillus, Geobacillus, Paragebacillus) and moderate (Bacillus, Brevibacillus, Ureibacillus, Paenibacillus) thermophilic aerobic bacilli strains to find out its linkage to phylogenetic variations between species. LC-MS was applied for the quantification of modified nucleosides using both natural and isotopically labeled standards. The presence of m<sup>2</sup>A and m<sup>7</sup>G modifications at high levels was determined in all species. Relatively high level of i<sup>6</sup>A and m<sup>5</sup>C modification was observed for Paenibacillus and Ureibacillus, respectively. The lowest level of Cm modification was found in Bacillus. The modification ms<sup>2</sup>i<sup>6</sup>A and m<sup>1</sup>G were absent in Brevibacillus and Ureibacillus, respectively, while modifications Am and m<sup>2</sup><sub>2</sub>G were observed only for Ureibacillus. While both obligate and moderate thermophilic species contain Gm, m<sup>1</sup>G and ms<sup>2</sup>i<sup>6</sup>A modifications, large quantities of them (especially Gm and ms<sup>2</sup>i<sup>6</sup>A modification) were detected in obligate thermophilic ones (Geobacillus, Paragebacillus and Anoxybacillus). The collective set of modified tRNA bases is genus-specific and linked to the phylogeny of bacilli. In addition, the dataset could be applied to distinguish obligate thermophilic bacilli from moderate ones.</p>","PeriodicalId":12302,"journal":{"name":"Extremophiles","volume":"26 1","pages":"11"},"PeriodicalIF":2.6000,"publicationDate":"2022-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8818000/pdf/","citationCount":"1","resultStr":"{\"title\":\"tRNA modification profiles in obligate and moderate thermophilic bacilli.\",\"authors\":\"Hovik Panosyan, Franziska R Traube, Caterina Brandmayr, Mirko Wagner, Thomas Carell\",\"doi\":\"10.1007/s00792-022-01258-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Transfer RNAs (tRNAs) are the most ancient RNA molecules in the cell, modification pattern of which is linked to phylogeny. The aim of this study was to determine the tRNA modification profiles of obligate (Anoxybacillus, Geobacillus, Paragebacillus) and moderate (Bacillus, Brevibacillus, Ureibacillus, Paenibacillus) thermophilic aerobic bacilli strains to find out its linkage to phylogenetic variations between species. LC-MS was applied for the quantification of modified nucleosides using both natural and isotopically labeled standards. The presence of m<sup>2</sup>A and m<sup>7</sup>G modifications at high levels was determined in all species. Relatively high level of i<sup>6</sup>A and m<sup>5</sup>C modification was observed for Paenibacillus and Ureibacillus, respectively. The lowest level of Cm modification was found in Bacillus. The modification ms<sup>2</sup>i<sup>6</sup>A and m<sup>1</sup>G were absent in Brevibacillus and Ureibacillus, respectively, while modifications Am and m<sup>2</sup><sub>2</sub>G were observed only for Ureibacillus. While both obligate and moderate thermophilic species contain Gm, m<sup>1</sup>G and ms<sup>2</sup>i<sup>6</sup>A modifications, large quantities of them (especially Gm and ms<sup>2</sup>i<sup>6</sup>A modification) were detected in obligate thermophilic ones (Geobacillus, Paragebacillus and Anoxybacillus). The collective set of modified tRNA bases is genus-specific and linked to the phylogeny of bacilli. In addition, the dataset could be applied to distinguish obligate thermophilic bacilli from moderate ones.</p>\",\"PeriodicalId\":12302,\"journal\":{\"name\":\"Extremophiles\",\"volume\":\"26 1\",\"pages\":\"11\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2022-02-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8818000/pdf/\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Extremophiles\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s00792-022-01258-z\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Extremophiles","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s00792-022-01258-z","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
tRNA modification profiles in obligate and moderate thermophilic bacilli.
Transfer RNAs (tRNAs) are the most ancient RNA molecules in the cell, modification pattern of which is linked to phylogeny. The aim of this study was to determine the tRNA modification profiles of obligate (Anoxybacillus, Geobacillus, Paragebacillus) and moderate (Bacillus, Brevibacillus, Ureibacillus, Paenibacillus) thermophilic aerobic bacilli strains to find out its linkage to phylogenetic variations between species. LC-MS was applied for the quantification of modified nucleosides using both natural and isotopically labeled standards. The presence of m2A and m7G modifications at high levels was determined in all species. Relatively high level of i6A and m5C modification was observed for Paenibacillus and Ureibacillus, respectively. The lowest level of Cm modification was found in Bacillus. The modification ms2i6A and m1G were absent in Brevibacillus and Ureibacillus, respectively, while modifications Am and m22G were observed only for Ureibacillus. While both obligate and moderate thermophilic species contain Gm, m1G and ms2i6A modifications, large quantities of them (especially Gm and ms2i6A modification) were detected in obligate thermophilic ones (Geobacillus, Paragebacillus and Anoxybacillus). The collective set of modified tRNA bases is genus-specific and linked to the phylogeny of bacilli. In addition, the dataset could be applied to distinguish obligate thermophilic bacilli from moderate ones.
期刊介绍:
Extremophiles features original research articles, reviews, and method papers on the biology, molecular biology, structure, function, and applications of microbial life at high or low temperature, pressure, acidity, alkalinity, salinity, or desiccation; or in the presence of organic solvents, heavy metals, normally toxic substances, or radiation.