一种内源性逆转录病毒,推测最近在一种有袋动物,红颈小袋鼠体内被内源性或重新安置。

IF 2.3 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Genome Pub Date : 2022-05-01 Epub Date: 2022-01-14 DOI:10.1139/gen-2021-0047
Sakura Hayashi, Konami Shimizu, Yusuke Honda, Yukako Katsura, Akihiko Koga
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引用次数: 4

摘要

一只白化小袋鼠的母亲拥有野生型的身体颜色。对这只白化小袋鼠的TYR(编码酪氨酸酶,对黑色素的生物合成至关重要)进行PCR和测序分析发现,在第一个外显子插入了7.1 kb长的DNA片段。由于该片段携带长末端重复序列,我们假设它是一种内源性逆转录病毒的副本,我们将其命名为walb。我们克隆了其他存在于这个物种和另一个小袋鼠物种基因组中的小袋鼠拷贝。这些拷贝存在长度变异,最长的拷贝(>8.0 kb)包含开放阅读框,其推导出的氨基酸序列与逆转录病毒gag、pol和env的氨基酸序列一致。目前尚不清楚walb拷贝是通过以下哪一种可能的过程插入TYR的:内源性(外源性病毒感染种系细胞),再感染(由先前内源性前病毒产生的病毒感染),或逆转录(前病毒的细胞内重新定位)。无论如何,在进化时间尺度上,插入TYR被认为是最近发生的事件,因为白化突变等位基因通常不会持续很长时间,因为它们在野生环境中具有有害作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby.

An albino infant wallaby was born to a mother with wild-type body color. PCR and sequencing analyses of TYR (encoding tyrosinase, which is essential for melanin biosynthesis) of this albino wallaby revealed a 7.1-kb-long DNA fragment inserted in the first exon. Since the fragment carried long terminal repeats, we assumed it to be a copy of an endogenous retrovirus, which we named walb. We cloned other walb copies residing in the genomes of this species and of another wallaby species. The copies exhibited length variation, and the longest copy (>8.0 kb) contained open reading frames whose deduced amino acid sequences were well aligned with those of gag, pol, and env of retroviruses. It is unknown through which of the following likely processes the walb copy was inserted into TYR: endogenization (infection of a germline cell by an exogenous virus), reinfection (infection by a virus produced from a previously endogenized provirus), or retrotransposition (intracellular relocation of a provirus). In any case, the insertion into TYR is considered to have been a recent event on an evolutionary timescale because albino mutant alleles generally do not persist for long because of their deleterious effects in wild circumstances.

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来源期刊
Genome
Genome 生物-生物工程与应用微生物
CiteScore
5.30
自引率
3.20%
发文量
42
审稿时长
6-12 weeks
期刊介绍: Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.
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