联合星系:生物医学计算的前沿。

Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks
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引用次数: 0

摘要

生物医学数据探索需要使用多种工具对大型数据集进行综合分析。十多年来,银河项目(https://galaxyproject.org)为研究人员提供了一个基于网络、用户友好、可扩展的数据分析框架,并辅以丰富的工具生态系统(https://usegalaxy.org/toolshed),用于执行基因组、蛋白质组、代谢组和成像实验。银河系统可以部署在云端(https://launch.usegalaxy.org)、机构计算集群和个人电脑上,也可以在一些公共服务器(如 https://usegalaxy.org)上随时使用。在本文中,我们将介绍创建 "银河即服务"(Galaxy-as-a-Service)的计划和进展--"银河即服务 "是将分布式数据和计算资源整合为一个全景分析平台。用户除了插入自己的私人资源外,还可以利用公共资源和机构资源池,帮助应对不同银河实例之间资源差异的挑战,实现生物医学数据的无缝分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Federated Galaxy: Biomedical Computing at the Frontier.

Federated Galaxy: Biomedical Computing at the Frontier.

Federated Galaxy: Biomedical Computing at the Frontier.

Federated Galaxy: Biomedical Computing at the Frontier.

Biomedical data exploration requires integrative analyses of large datasets using a diverse ecosystem of tools. For more than a decade, the Galaxy project (https://galaxyproject.org) has provided researchers with a web-based, user-friendly, scalable data analysis framework complemented by a rich ecosystem of tools (https://usegalaxy.org/toolshed) used to perform genomic, proteomic, metabolomic, and imaging experiments. Galaxy can be deployed on the cloud (https://launch.usegalaxy.org), institutional computing clusters, and personal computers, or readily used on a number of public servers (e.g., https://usegalaxy.org). In this paper, we present our plan and progress towards creating Galaxy-as-a-Service-a federation of distributed data and computing resources into a panoptic analysis platform. Users can leverage a pool of public and institutional resources, in addition to plugging-in their private resources, helping answer the challenge of resource divergence across various Galaxy instances and enabling seamless analysis of biomedical data.

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