基于标准iGEM部件的砷生物传感器非相干前馈回路的设计与评价。

IF 2.6 Q2 BIOCHEMICAL RESEARCH METHODS
Synthetic biology (Oxford, England) Pub Date : 2017-12-08 eCollection Date: 2017-01-01 DOI:10.1093/synbio/ysx006
Federico Barone, Francisco Dorr, Luciano E Marasco, Sebastián Mildiner, Inés L Patop, Santiago Sosa, Lucas G Vattino, Federico A Vignale, Edgar Altszyler, Benjamin Basanta, Nicolás Carlotto, Javier Gasulla, Manuel Giménez, Alicia Grande, Nicolás Nieto Moreno, Hernán R Bonomi, Alejandro D Nadra
{"title":"基于标准iGEM部件的砷生物传感器非相干前馈回路的设计与评价。","authors":"Federico Barone,&nbsp;Francisco Dorr,&nbsp;Luciano E Marasco,&nbsp;Sebastián Mildiner,&nbsp;Inés L Patop,&nbsp;Santiago Sosa,&nbsp;Lucas G Vattino,&nbsp;Federico A Vignale,&nbsp;Edgar Altszyler,&nbsp;Benjamin Basanta,&nbsp;Nicolás Carlotto,&nbsp;Javier Gasulla,&nbsp;Manuel Giménez,&nbsp;Alicia Grande,&nbsp;Nicolás Nieto Moreno,&nbsp;Hernán R Bonomi,&nbsp;Alejandro D Nadra","doi":"10.1093/synbio/ysx006","DOIUrl":null,"url":null,"abstract":"<p><p>The diversity and flexibility of life offers a wide variety of molecules and systems useful for biosensing. A biosensor device should be robust, specific and reliable. Inorganic arsenic is a highly toxic water contaminant with worldwide distribution that poses a threat to public health. With the goal of developing an arsenic biosensor, we designed an incoherent feed-forward loop (I-FFL) genetic circuit to correlate its output pulse with the input signal in a relatively time-independent manner. The system was conceived exclusively based on the available BioBricks in the iGEM Registry of Standard Biological Parts. The expected behavior <i>in silico</i> was achieved; upon arsenic addition, the system generates a short-delayed reporter protein pulse that is dose dependent to the contaminant levels. This work is an example of the power and variety of the iGEM Registry of Standard Biological Parts, which can be reused in different sophisticated system designs like I-FFLs. Besides the scientific results, one of the main impacts of this synthetic biology project is the influence it had on team's members training and career choices which are summarized at the end of this article.</p>","PeriodicalId":74902,"journal":{"name":"Synthetic biology (Oxford, England)","volume":"2 1","pages":"ysx006"},"PeriodicalIF":2.6000,"publicationDate":"2017-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1093/synbio/ysx006","citationCount":"14","resultStr":"{\"title\":\"Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts.\",\"authors\":\"Federico Barone,&nbsp;Francisco Dorr,&nbsp;Luciano E Marasco,&nbsp;Sebastián Mildiner,&nbsp;Inés L Patop,&nbsp;Santiago Sosa,&nbsp;Lucas G Vattino,&nbsp;Federico A Vignale,&nbsp;Edgar Altszyler,&nbsp;Benjamin Basanta,&nbsp;Nicolás Carlotto,&nbsp;Javier Gasulla,&nbsp;Manuel Giménez,&nbsp;Alicia Grande,&nbsp;Nicolás Nieto Moreno,&nbsp;Hernán R Bonomi,&nbsp;Alejandro D Nadra\",\"doi\":\"10.1093/synbio/ysx006\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The diversity and flexibility of life offers a wide variety of molecules and systems useful for biosensing. A biosensor device should be robust, specific and reliable. Inorganic arsenic is a highly toxic water contaminant with worldwide distribution that poses a threat to public health. With the goal of developing an arsenic biosensor, we designed an incoherent feed-forward loop (I-FFL) genetic circuit to correlate its output pulse with the input signal in a relatively time-independent manner. The system was conceived exclusively based on the available BioBricks in the iGEM Registry of Standard Biological Parts. The expected behavior <i>in silico</i> was achieved; upon arsenic addition, the system generates a short-delayed reporter protein pulse that is dose dependent to the contaminant levels. This work is an example of the power and variety of the iGEM Registry of Standard Biological Parts, which can be reused in different sophisticated system designs like I-FFLs. Besides the scientific results, one of the main impacts of this synthetic biology project is the influence it had on team's members training and career choices which are summarized at the end of this article.</p>\",\"PeriodicalId\":74902,\"journal\":{\"name\":\"Synthetic biology (Oxford, England)\",\"volume\":\"2 1\",\"pages\":\"ysx006\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2017-12-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1093/synbio/ysx006\",\"citationCount\":\"14\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Synthetic biology (Oxford, England)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1093/synbio/ysx006\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2017/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Synthetic biology (Oxford, England)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1093/synbio/ysx006","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 14

摘要

生命的多样性和灵活性为生物传感提供了各种各样的分子和系统。生物传感器装置应该是健壮的、特异的和可靠的。无机砷是一种剧毒的水污染物,分布在世界各地,对公众健康构成威胁。为了开发一种砷生物传感器,我们设计了一个非相干前馈回路(I-FFL)遗传电路,以相对不依赖于时间的方式将其输出脉冲与输入信号相关联。该系统完全基于iGEM标准生物部件注册表中可用的生物砖。在计算机上达到了预期的性能;在添加砷后,该系统产生一个短延迟的报告蛋白脉冲,其剂量取决于污染物水平。这项工作是iGEM标准生物部件注册表的功能和多样性的一个例子,它可以在不同的复杂系统设计中重复使用,如i - ffl。除了科学成果之外,这个合成生物学项目的一个主要影响是它对团队成员的培训和职业选择的影响,这在文章的最后进行了总结。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts.

Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts.

Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts.

Design and evaluation of an incoherent feed-forward loop for an arsenic biosensor based on standard iGEM parts.

The diversity and flexibility of life offers a wide variety of molecules and systems useful for biosensing. A biosensor device should be robust, specific and reliable. Inorganic arsenic is a highly toxic water contaminant with worldwide distribution that poses a threat to public health. With the goal of developing an arsenic biosensor, we designed an incoherent feed-forward loop (I-FFL) genetic circuit to correlate its output pulse with the input signal in a relatively time-independent manner. The system was conceived exclusively based on the available BioBricks in the iGEM Registry of Standard Biological Parts. The expected behavior in silico was achieved; upon arsenic addition, the system generates a short-delayed reporter protein pulse that is dose dependent to the contaminant levels. This work is an example of the power and variety of the iGEM Registry of Standard Biological Parts, which can be reused in different sophisticated system designs like I-FFLs. Besides the scientific results, one of the main impacts of this synthetic biology project is the influence it had on team's members training and career choices which are summarized at the end of this article.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信