宿主、质粒和环境在决定质粒转移率中的作用:一项荟萃分析

IF 1.8 4区 生物学 Q3 GENETICS & HEREDITY
Richard J. Sheppard, Alice E. Beddis, Timothy G. Barraclough
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引用次数: 34

摘要

质粒以高度可变的速率转移,传播超过10个数量级。虽然几十年来一直在测量速率,并且已知速率受到一些生物和非生物因素的影响,但尚不清楚这些因素如何以及在多大程度上决定了转移速率。我们对33篇论文中1224篇发表的转移率进行了荟萃分析(筛选到612篇转移率),以评估这种差异。超过四分之三的变异可以预测,质粒抑制和媒介类型(固体与液体)被确定为解释大多数变异的一般变量。在宿主和质粒身份中,受体细菌的身份解释了最多的变化,在某些模型中高达34%,比任何其他解释变量都要多。这些结果强调了受体在决定转移速率方面的作用,并显示了一个改进的转移值范围及其相关因素,可以在将来建模质粒持久性时使用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The role of hosts, plasmids and environment in determining plasmid transfer rates: A meta-analysis

Plasmids transfer at highly variable rates that spread over 10 orders of magnitude. While rates have been measured for decades and it is known that the rates are affected bysome biotic and abiotic factors, it is unclear how and to what extent these factors determine the rates of transfer. We performed a meta-analysis of 1224 published transfer rates from 33 papers (filtered to 612 transfer rates) to assess this variation. Over three quarters of the variation can be predicted, with plasmid repression and media type (solid versus liquid) identified as general variables explaining the most variation. Of the host and plasmid identities, identity of the recipient bacterium explained the most variation, up to 34% in some models, and more than any other explanatory variable. These results emphasize the role of the recipient in determining the rate of transfer, and show an improved range of transfer values and their correlates that can be used in future when modeling plasmid persistence.

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来源期刊
Plasmid
Plasmid 生物-遗传学
CiteScore
4.70
自引率
3.80%
发文量
21
审稿时长
53 days
期刊介绍: Plasmid publishes original research on genetic elements in all kingdoms of life with emphasis on maintenance, transmission and evolution of extrachromosomal elements. Objects of interest include plasmids, bacteriophages, mobile genetic elements, organelle DNA, and genomic and pathogenicity islands.
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