{"title":"生活污水中诺如病毒、轮状病毒和人类星状病毒的检测与分子流行病学","authors":"Pei Wang, Zexin Tao, Suting Wang, Nan Zhou, Xiaojuan Lin, Haiyan Wang, Lizhi Song, Aiqiang Xu","doi":"","DOIUrl":null,"url":null,"abstract":"<p><p>To assess the significance of environmental surveillance in the control and prevention of viral gastroenteritis, we analyzed the molecular characteristics of norovirus (NoV), rotavirus(RV),and human astrovirus (HAstV), sequences detected in domestic sewage. Environmental sewage monitoring sites were set up in three cities in Shandong, China. RNA was extracted from seven sewage samples collected each year from 2009 to 2015.RT-PCR detection of norovirus, rotavirus, and human astrovirus was performed. Positive PCR segments were cloned into a T-vector, transformed and sequenced, and genotyping and phylogenic analysis performed. A total of 210 viral sequences belonging to 6NoV I,4NoV II,3RV G,3RV P and 4HAstV were obtained.GI.2,GII.4,G9,P[8],and HAstV-1were the most frequently detected types. Phylogenetic analysis revealed multiple transmission chains in the genotypes of GI.3,GI.6,GII.4,G9,P[8],HAstV-1,and HAstV-4.The results showed not only that sewage contains dramatic information regarding gastroenteritis viruses, but also that environmental surveillance is an important approach in monitoring the regional circulation of specific viruses.</p>","PeriodicalId":8776,"journal":{"name":"Bing du xue bao = Chinese journal of virology","volume":"32 4","pages":"478-83"},"PeriodicalIF":0.0000,"publicationDate":"2016-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"[Detection and Molecular Epidemiology of Norovirus, Rotavirus and Human Astrovirus in Domestic Sewage].\",\"authors\":\"Pei Wang, Zexin Tao, Suting Wang, Nan Zhou, Xiaojuan Lin, Haiyan Wang, Lizhi Song, Aiqiang Xu\",\"doi\":\"\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>To assess the significance of environmental surveillance in the control and prevention of viral gastroenteritis, we analyzed the molecular characteristics of norovirus (NoV), rotavirus(RV),and human astrovirus (HAstV), sequences detected in domestic sewage. Environmental sewage monitoring sites were set up in three cities in Shandong, China. RNA was extracted from seven sewage samples collected each year from 2009 to 2015.RT-PCR detection of norovirus, rotavirus, and human astrovirus was performed. Positive PCR segments were cloned into a T-vector, transformed and sequenced, and genotyping and phylogenic analysis performed. A total of 210 viral sequences belonging to 6NoV I,4NoV II,3RV G,3RV P and 4HAstV were obtained.GI.2,GII.4,G9,P[8],and HAstV-1were the most frequently detected types. Phylogenetic analysis revealed multiple transmission chains in the genotypes of GI.3,GI.6,GII.4,G9,P[8],HAstV-1,and HAstV-4.The results showed not only that sewage contains dramatic information regarding gastroenteritis viruses, but also that environmental surveillance is an important approach in monitoring the regional circulation of specific viruses.</p>\",\"PeriodicalId\":8776,\"journal\":{\"name\":\"Bing du xue bao = Chinese journal of virology\",\"volume\":\"32 4\",\"pages\":\"478-83\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bing du xue bao = Chinese journal of virology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bing du xue bao = Chinese journal of virology","FirstCategoryId":"1085","ListUrlMain":"","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
为评价环境监测在病毒性胃肠炎防治中的意义,分析了生活污水中检测到的诺如病毒(NoV)、轮状病毒(RV)和人类星状病毒(HAstV)的分子序列特征。在中国山东的三个城市建立了环境污水监测点。从2009年至2015年每年收集的7份污水样本中提取RNA。RT-PCR检测诺如病毒、轮状病毒和人星状病毒。将阳性PCR片段克隆到t载体上,进行转化和测序,并进行基因分型和系统发育分析。共获得210个病毒序列,分别属于6NoV I、4NoV II、3RV G、3RV P和4HAstV。4、G9、P[8]和hastv -1是检出最多的类型。系统发育分析显示GI.3、GI.6、gi基因型存在多条传播链。4、G9 P [8], HAstV-1, HAstV-4。结果表明,污水中含有大量的胃肠炎病毒信息,环境监测是监测特定病毒区域传播的重要手段。
[Detection and Molecular Epidemiology of Norovirus, Rotavirus and Human Astrovirus in Domestic Sewage].
To assess the significance of environmental surveillance in the control and prevention of viral gastroenteritis, we analyzed the molecular characteristics of norovirus (NoV), rotavirus(RV),and human astrovirus (HAstV), sequences detected in domestic sewage. Environmental sewage monitoring sites were set up in three cities in Shandong, China. RNA was extracted from seven sewage samples collected each year from 2009 to 2015.RT-PCR detection of norovirus, rotavirus, and human astrovirus was performed. Positive PCR segments were cloned into a T-vector, transformed and sequenced, and genotyping and phylogenic analysis performed. A total of 210 viral sequences belonging to 6NoV I,4NoV II,3RV G,3RV P and 4HAstV were obtained.GI.2,GII.4,G9,P[8],and HAstV-1were the most frequently detected types. Phylogenetic analysis revealed multiple transmission chains in the genotypes of GI.3,GI.6,GII.4,G9,P[8],HAstV-1,and HAstV-4.The results showed not only that sewage contains dramatic information regarding gastroenteritis viruses, but also that environmental surveillance is an important approach in monitoring the regional circulation of specific viruses.