产纤维素共生大肠杆菌1094的短基因组报告。

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2018-05-09 eCollection Date: 2018-01-01 DOI:10.1186/s40793-018-0316-0
Joaquin Bernal-Bayard, Laura Gomez-Valero, Aimee Wessel, Varun Khanna, Christiane Bouchier, Jean-Marc Ghigo
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引用次数: 2

摘要

细菌表面定植和生物膜的形成通常依赖于细胞外聚合物基质的产生,这种基质介导细胞-细胞和细胞-表面接触。在大肠杆菌和许多Betaproteobacteria和Gammaproteobacteria中,纤维素通常是细胞外基质的主要成分。在这里,我们报告了产纤维素菌株大肠杆菌1094的完整基因组序列,并将其与大肠杆菌a系统发育群中其他五个密切相关的基因组进行了比较。我们对负责纤维素生物合成的基因编码区域进行了比较分析,并讨论了可能导致几种大肠杆菌菌株失去这一重要适应优势的变化。数据保存:带注释的基因组序列已保存在欧洲核苷酸档案馆,登录号为PRJEB21000。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Short genome report of cellulose-producing commensal <i>Escherichia coli</i> 1094.

Short genome report of cellulose-producing commensal <i>Escherichia coli</i> 1094.

Short genome report of cellulose-producing commensal <i>Escherichia coli</i> 1094.

Short genome report of cellulose-producing commensal Escherichia coli 1094.

Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In Escherichia coli and many Betaproteobacteria and Gammaproteobacteria cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain E. coli 1094 and compare it with five other closely related genomes within E. coli phylogenetic group A. We present a comparative analysis of the regions encoding genes responsible for cellulose biosynthesis and discuss the changes that could have led to the loss of this important adaptive advantage in several E. coli strains. Data deposition: The annotated genome sequence has been deposited at the European Nucleotide Archive under the accession number PRJEB21000.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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