细胞毒性离子液体(ILs)通过DPPC双分子层的分配和运输行为:来自分子动力学模拟的见解。

Q3 Biochemistry, Genetics and Molecular Biology
Mokhtar Ganjali Koli, Khaled Azizi
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引用次数: 12

摘要

采用分子动力学(MD)模拟了具有原子细节的中等细胞毒性离子液体(ILs),即胆碱-二(2-乙基己基)磷酸(CBEH)、胆碱-二(2,4,4-三甲基戊基)膦酸盐(CTMP)和胆碱- O,O-二乙基二硫代磷酸(CDEP)在323 K时在完全水合的双棕榈酰磷脂酰胆碱(DPPC)双分子层中的分配和运输行为。选择il的结构是为了了解偶极子和色散力在膜中il分布中的作用是否可能。通过质量密度、静电势、序参量、扩散系数和氢键形成等分析,确定了阴离子在膜内的准确位置。此外,利用平均力势(PMF)法计算了阴离子从DPPC膜转移到体水中的自由能分布。尽管大量水中存在较少的细胞毒性DEP,但发现更多的细胞毒性TMP和BEH il留在膜中,并且穿过BEH双层中心的能量势垒更高。各种il对P-N矢量无显著影响。脂质双分子层厚度在所有含脂质系统中均下降,而每脂质面积增加。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The partition and transport behavior of cytotoxic ionic liquids (ILs) through the DPPC bilayer: Insights from molecular dynamics simulation.

A molecular dynamics (MD) simulation with atomistic details was performed to examine the partitioning and transport behavior of moderately cytotoxic ionic liquids (ILs), namely choline bis(2-ethylhexyl) phosphate (CBEH), choline bis(2,4,4-trimethylpentyl) phosphinate (CTMP) and choline O,O-diethyl dithiophosphate (CDEP) in a fully hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer in the fluid phase at 323 K. The structure of ILs was so selected to understand if the role of dipole and dispersion forces in the ILs distribution in the membrane can be possible. Several analyses including mass density, electrostatic potential, order parameter, diffusion coefficients and hydrogen bond formation, was carried out to determine the precise location of the anionic species inside the membrane. Moreover, the potential of the mean force (PMF) method was used to calculate free energy profile for transferring anionic species from the DPPC membrane into the bulk water. While less cytotoxic DEP is located within the bulk water, more cytotoxic TMP and BEH ILs were found to remain in the membrane and the energy barrier for crossing through the bilayer center of BEH was higher. Various ILs have no significant effect on P-N vector. The thickness of lipid bilayer decreased in all systems comprising ILs, while area per lipid increased.

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来源期刊
Molecular Membrane Biology
Molecular Membrane Biology 生物-生化与分子生物学
CiteScore
4.80
自引率
0.00%
发文量
0
审稿时长
>12 weeks
期刊介绍: Cessation. Molecular Membrane Biology provides a forum for high quality research that serves to advance knowledge in molecular aspects of biological membrane structure and function. The journal welcomes submissions of original research papers and reviews in the following areas: • Membrane receptors and signalling • Membrane transporters, pores and channels • Synthesis and structure of membrane proteins • Membrane translocation and targeting • Lipid organisation and asymmetry • Model membranes • Membrane trafficking • Cytoskeletal and extracellular membrane interactions • Cell adhesion and intercellular interactions • Molecular dynamics and molecular modelling of membranes. • Antimicrobial peptides.
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