三种具有生物修复潜力的冻干杆菌菌株的基因组序列

Aide Lasa, Jesús L. Romalde
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引用次数: 19

摘要

迄今为止,从不同来源分离出来的37种公认的冷杆菌属,但它们更常在寒冷和其他低水活动的非极地环境中发现。该属的一些菌株显示出不同的酶活性,在生物修复或食品工业中具有潜在的应用前景。在本研究中,描述了从加利西亚(西班牙)饲养的蛤中分离的三种冻干杆菌样菌株(C 20.9, Cmf 22.2和Rd 27.2)的全基因组序列。测序结果显示,c20.9、cmf22.2和Rd 27.2分离物的组装大小分别为3,143,782 bp、3,168,467 bp和3,028,386 bp。在鉴定的基因组编码序列中,发现了汞解毒和生物地球化学基因,以及重金属和抗生素耐药性相关基因。此外,还确定了毒力相关的特征,如铁载体弧菌铁蛋白或有氧动作蛋白样铁载体。16S rRNA基因的系统发育分析表明,这些菌株可能是冷杆菌属的新种。该菌株的基因组序列已存放在DDBJ/EMBL/GenBank中,登录号为MRYA00000000 (Cmf 22.2)、MRYB00000000 (Rd 27.2)和MRYC00000000 (C 20.9),序列可在https://www.ncbi.nlm.nih.gov/bioproject/PRJNA353858网站上找到。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Genome sequence of three Psychrobacter sp. strains with potential applications in bioremediation

Genome sequence of three Psychrobacter sp. strains with potential applications in bioremediation

Genome sequence of three Psychrobacter sp. strains with potential applications in bioremediation

To date, the genus Psychrobacter consists of 37 recognized species isolated from different sources, however they are more frequently found in cold and other non-polar environments of low water activity. Some strains belonging to the genus have shown different enzymatic activities with potential applications in bioremediation or food industry. In the present study, the whole genome sequences of three Psychrobacter-like strains (C 20.9, Cmf 22.2 and Rd 27.2) isolated from reared clams in Galicia (Spain) are described. The sequenced genomes resulted in an assembly size of 3,143,782 bp for C 20.9 isolate, 3,168,467 bp for Cmf 22.2 isolate and 3,028,386 bp for Rd 27.2 isolate. Among the identified coding sequences of the genomes, mercury detoxification and biogeochemistry genes were found, as well as genes related to heavy metals and antibiotic resistance. Also virulence-related features were identified such as the siderophore vibrioferrin or an aerobactin-like siderophore. The phylogenetic analysis of the 16S rRNA gene suggested that these strains may represent novel species of the Psychrobacter genus. The genome sequences of the Psychrobacter sp. strains have been deposited at DDBJ/EMBL/GenBank under the accession numbers MRYA00000000 (Cmf 22.2), MRYB00000000 (Rd 27.2) and MRYC00000000 (C 20.9), and the sequences could be found at the site https://www.ncbi.nlm.nih.gov/bioproject/PRJNA353858.

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