NucVoter:使用下一代测序数据进行可靠核小体预测的投票算法。

ISRN bioinformatics Pub Date : 2013-11-07 eCollection Date: 2013-01-01 DOI:10.1155/2013/174064
Boseon Byeon
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引用次数: 2

摘要

核小体由包裹在组蛋白八聚体周围的DNA组成,是动态的,它们的结构,包括它们的位置、大小和占用,都是可以改变的。核小体可以通过控制蛋白质的DNA可及性来调节基因表达。利用下一代测序技术以及微球菌核酸酶消化等实验室方法,预测核小体的基因组位置是可能的。然而,核小体的真实位置是未知的,并且很难利用下一代测序数据确定它们的确切位置。本文提出了一种新的投票算法NucVoter,用于可靠地预测核小体的位置。多个模型验证了核小体被模型以最高优先级放置的共识区域。NucVoter显著提高核小体预测的性能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

NucVoter: A Voting Algorithm for Reliable Nucleosome Prediction Using Next-Generation Sequencing Data.

NucVoter: A Voting Algorithm for Reliable Nucleosome Prediction Using Next-Generation Sequencing Data.

NucVoter: A Voting Algorithm for Reliable Nucleosome Prediction Using Next-Generation Sequencing Data.

NucVoter: A Voting Algorithm for Reliable Nucleosome Prediction Using Next-Generation Sequencing Data.

Nucleosomes, which consist of DNA wrapped around histone octamers, are dynamic, and their structure, including their location, size, and occupancy, can be transformed. Nucleosomes can regulate gene expression by controlling the DNA accessibility of proteins. Using next-generation sequencing techniques along with such laboratory methods as micrococcal nuclease digestion, predicting the genomic locations of nucleosomes is possible. However, the true locations of nucleosomes are unknown, and it is difficult to determine their exact locations using next-generation sequencing data. This paper proposes a novel voting algorithm, NucVoter, for the reliable prediction of nucleosome locations. Multiple models verify the consensus areas in which nucleosomes are placed by the model with the highest priority. NucVoter significantly improves the performance of nucleosome prediction.

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