布尔网络的性质及其测试方法。

Johannes Georg Klotz, Ronny Feuer, Oliver Sawodny, Martin Bossert, Michael Ederer, Steffen Schober
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引用次数: 13

摘要

转录调控网络通常被建模为布尔网络。我们讨论了布尔函数(BFs)的某些性质,这些性质在这种网络中被认为是重要的,即与单函数或解析函数类的隶属关系。更值得关注的是函数的平均灵敏度(AS)。在本文中,我们将讨论几种算法来测试感兴趣的属性。为了测试函数的解析性质,我们应用谱技术,谱技术也可用于表征函数的AS以及单态bf中变量的影响。在此基础上,我们给出了基于谱表示的单点bf的上下界。最后,我们将这些方法应用于大肠杆菌的转录调控网络,该网络控制着大肠杆菌代谢的中心部分。我们发现所有的函数都是单函数。此外,对网络的自适应分析表明,该网络对二元变量的暂态波动具有优异的鲁棒性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Properties of Boolean networks and methods for their tests.

Properties of Boolean networks and methods for their tests.

Properties of Boolean networks and methods for their tests.

Properties of Boolean networks and methods for their tests.

: Transcriptional regulation networks are often modeled as Boolean networks. We discuss certain properties of Boolean functions (BFs), which are considered as important in such networks, namely, membership to the classes of unate or canalizing functions. Of further interest is the average sensitivity (AS) of functions. In this article, we discuss several algorithms to test the properties of interest. To test canalizing properties of functions, we apply spectral techniques, which can also be used to characterize the AS of functions as well as the influences of variables in unate BFs. Further, we provide and review upper and lower bounds on the AS of unate BFs based on the spectral representation. Finally, we apply these methods to a transcriptional regulation network of Escherichia coli, which controls central parts of the E. coli metabolism. We find that all functions are unate. Also the analysis of the AS of the network reveals an exceptional robustness against transient fluctuations of the binary variables.a.

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