大鼠巨噬细胞凝集素碳水化合物识别结构域的分子模型及其结合位点分析

Jürgen Bajorath
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引用次数: 0

摘要

通过对比建模和逆折叠分析,建立了大鼠巨噬细胞c型凝集素碳水化合物识别结构域的三维模型。在序列相似性较低的情况下,比较建模是基于x射线结构和序列-结构比对所提供的信息。模型的序列-结构相容性良好。与甘露糖结合蛋白的半乳糖特异性突变体的x射线结构比较,分析了其结合位点。结合亚洲糖蛋白受体的诱变数据,探讨巨噬细胞凝集素的特异性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A molecular model of the carbohydrate recognition domain of a rat macrophage lectin and analysis of its binding site

A three-dimensional model of the carbohydrate recognition domain of a rat macrophage C-type lectin has been constructed by comparative modeling and assessed by inverse folding analysis. Comparative modeling in the presence of low sequence similarity was based on information provided by comparison of X-ray structures and sequence-structure alignments. The sequence-structure compatibility of the model was sound. Its binding site was analyzed in comparison to the X-ray structure of a galactose-specific mutant of the mannose-binding protein. The specificity of the macrophage lectin was discussed in light of mutagenesis data on asialoglycoprotein receptors.

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