所有地方的一切都同时发生:一种基于概率的增强采样方法来处理罕见事件。

IF 12 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Enrico Trizio, Peilin Kang, Michele Parrinello
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引用次数: 0

摘要

研究罕见事件是计算机模拟许多领域的核心问题。我们最近提出了一种解决这个问题的方法,该方法涉及计算提交者函数,展示了如何以变分的方式迭代计算它,同时有效地对转换状态集合进行采样。在这里,我们通过将其与类似元动力学的增强抽样方法相结合,极大地改进了这个过程,在这种方法中,提交者的对数函数被用作集合变量。这一过程导致了自由能表面的精确采样,其中过渡态和亚稳盆地的研究同样彻底。我们表明,我们的方法可以用于具有竞争反应路径和亚稳中间体的可能性的情况。此外,我们还演示了如何从优化的提交者模型和采样数据中获得物理洞察力,从而提供了所研究的罕见事件的完整特征。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Everything everywhere all at once: a probability-based enhanced sampling approach to rare events.

The problem of studying rare events is central to many areas of computer simulations. We recently proposed an approach to solving this problem that involves computing the committor function, showing how it can be iteratively computed in a variational way while efficiently sampling the transition state ensemble. Here we greatly improve this procedure by combining it with a metadynamics-like enhanced sampling approach in which a logarithmic function of the committor is used as a collective variable. This procedure leads to an accurate sampling of the free energy surface in which transition states and metastable basins are studied with the same thoroughness. We show that our approach can be used in cases with the possibility of competing reactive paths and metastable intermediates. In addition, we demonstrate how physical insights can be obtained from the optimized committor model and the sampled data, thus providing a full characterization of the rare event under study.

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CiteScore
11.70
自引率
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