P M Vassiliev, M A Perfilev, A V Golubeva, A N Kochetkov, D V Maltsev
{"title":"基于多对接能谱关联卷积的化合物抗焦虑活性多目标神经网络模型。","authors":"P M Vassiliev, M A Perfilev, A V Golubeva, A N Kochetkov, D V Maltsev","doi":"10.18097/PBMC20247006428","DOIUrl":null,"url":null,"abstract":"<p><p>Anxiety disorders are one of the most common mental health pathologies in the world. They require searc h and development of novel effective pharmacologically active substances. Thus, the development of new approaches to the search for anxiolytic substances by artificial intelligence methods is an important area of modern bioinformatics and pharmacology. In this work, a multi-target model of the dependence of the anxiolytic activity of chemical compounds on their integral affinity to relevant target proteins based on the correlation convolution of multiple docking energy spectra has been constructed using the method of artificial neural networks. The training set of the structure and activity of 537 known anxiolytic substances was formed on the basis of the previously created database, and optimized 3D models of these compounds were built. 22 biotargets presumably relevant to anxiolytic activity were identified and their valid 3D models were found. For each biotarget, 27 multiple docking spaces have been formed throughout its entire volume. Multiple ensemble molecular docking of 537 known anxiolytic compounds into all spaces of relevant target proteins has been performed. The correlation convolution of the calculated energy spectra of multiple docking was carried out. Using seven training options based on artificial multilayer perceptron neural networks, the multi-target model of depending anxiolytic activity chemical compounds on 22 parameters of the correlation convolution of the multiple docking spectra energy was constructed. The predictive ability of the created model was characterized Acc = 91.2% and AUCROC = 94.4%, with statistical significance of p < 1×10⁻¹⁵. The found model is currently used in the search for new substances with high anxiolytic activity.</p>","PeriodicalId":8889,"journal":{"name":"Biomeditsinskaya khimiya","volume":"70 6","pages":"428-434"},"PeriodicalIF":0.0000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Multi-target neural network model of anxiolytic activity of chemical compounds using correlation convolution of multiple docking energy spectra.\",\"authors\":\"P M Vassiliev, M A Perfilev, A V Golubeva, A N Kochetkov, D V Maltsev\",\"doi\":\"10.18097/PBMC20247006428\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Anxiety disorders are one of the most common mental health pathologies in the world. They require searc h and development of novel effective pharmacologically active substances. Thus, the development of new approaches to the search for anxiolytic substances by artificial intelligence methods is an important area of modern bioinformatics and pharmacology. In this work, a multi-target model of the dependence of the anxiolytic activity of chemical compounds on their integral affinity to relevant target proteins based on the correlation convolution of multiple docking energy spectra has been constructed using the method of artificial neural networks. The training set of the structure and activity of 537 known anxiolytic substances was formed on the basis of the previously created database, and optimized 3D models of these compounds were built. 22 biotargets presumably relevant to anxiolytic activity were identified and their valid 3D models were found. For each biotarget, 27 multiple docking spaces have been formed throughout its entire volume. Multiple ensemble molecular docking of 537 known anxiolytic compounds into all spaces of relevant target proteins has been performed. The correlation convolution of the calculated energy spectra of multiple docking was carried out. Using seven training options based on artificial multilayer perceptron neural networks, the multi-target model of depending anxiolytic activity chemical compounds on 22 parameters of the correlation convolution of the multiple docking spectra energy was constructed. The predictive ability of the created model was characterized Acc = 91.2% and AUCROC = 94.4%, with statistical significance of p < 1×10⁻¹⁵. The found model is currently used in the search for new substances with high anxiolytic activity.</p>\",\"PeriodicalId\":8889,\"journal\":{\"name\":\"Biomeditsinskaya khimiya\",\"volume\":\"70 6\",\"pages\":\"428-434\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biomeditsinskaya khimiya\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.18097/PBMC20247006428\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomeditsinskaya khimiya","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.18097/PBMC20247006428","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0
摘要
焦虑症是世界上最常见的精神疾病之一。它们需要寻找和开发新的有效的药理活性物质。因此,通过人工智能方法寻找抗焦虑物质的新方法的发展是现代生物信息学和药理学的一个重要领域。本文采用人工神经网络的方法,基于多个对接能谱的关联卷积,构建了化合物抗焦虑活性与其对相关靶蛋白整体亲和力依赖的多靶点模型。在之前建立的数据库的基础上,形成了537种已知抗焦虑物质的结构和活性的训练集,并构建了这些化合物的优化三维模型。确定了22个可能与抗焦虑活性相关的生物靶点,并找到了有效的3D模型。对于每个生物靶标,在整个体积中形成了27个多个对接空间。537种已知抗焦虑化合物在相关靶蛋白的所有空间中进行了多系综分子对接。对计算得到的多次对接能谱进行了相关卷积。利用基于人工多层感知器神经网络的7个训练选项,构建了多对接光谱能量关联卷积的22个参数依赖抗焦虑活性化合物的多目标模型。建立的模型预测能力Acc = 91.2%, AUCROC = 94.4%, p < 1×10⁻¹5。所发现的模型目前用于寻找具有高抗焦虑活性的新物质。
Multi-target neural network model of anxiolytic activity of chemical compounds using correlation convolution of multiple docking energy spectra.
Anxiety disorders are one of the most common mental health pathologies in the world. They require searc h and development of novel effective pharmacologically active substances. Thus, the development of new approaches to the search for anxiolytic substances by artificial intelligence methods is an important area of modern bioinformatics and pharmacology. In this work, a multi-target model of the dependence of the anxiolytic activity of chemical compounds on their integral affinity to relevant target proteins based on the correlation convolution of multiple docking energy spectra has been constructed using the method of artificial neural networks. The training set of the structure and activity of 537 known anxiolytic substances was formed on the basis of the previously created database, and optimized 3D models of these compounds were built. 22 biotargets presumably relevant to anxiolytic activity were identified and their valid 3D models were found. For each biotarget, 27 multiple docking spaces have been formed throughout its entire volume. Multiple ensemble molecular docking of 537 known anxiolytic compounds into all spaces of relevant target proteins has been performed. The correlation convolution of the calculated energy spectra of multiple docking was carried out. Using seven training options based on artificial multilayer perceptron neural networks, the multi-target model of depending anxiolytic activity chemical compounds on 22 parameters of the correlation convolution of the multiple docking spectra energy was constructed. The predictive ability of the created model was characterized Acc = 91.2% and AUCROC = 94.4%, with statistical significance of p < 1×10⁻¹⁵. The found model is currently used in the search for new substances with high anxiolytic activity.
Biomeditsinskaya khimiyaBiochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
CiteScore
1.30
自引率
0.00%
发文量
49
期刊介绍:
The aim of the Russian-language journal "Biomeditsinskaya Khimiya" (Biomedical Chemistry) is to introduce the latest results obtained by scientists from Russia and other Republics of the Former Soviet Union. The Journal will cover all major areas of Biomedical chemistry, including neurochemistry, clinical chemistry, molecular biology of pathological processes, gene therapy, development of new drugs and their biochemical pharmacology, introduction and advertisement of new (biochemical) methods into experimental and clinical medicine etc. The Journal also publish review articles. All issues of journal usually contain invited reviews. Papers written in Russian contain abstract (in English).