利用有丝分裂基因组揭示虹彩鳉的系统发育关系并分析辽宁虹彩鳉的选择压力(虹彩鳉科:龙喙鳉属)。

IF 2.7 2区 农林科学 Q1 ENTOMOLOGY
Insects Pub Date : 2024-11-03 DOI:10.3390/insects15110858
Yuxin Chen, Yani Yuan, Wenhui Yang, Kenneth B Storey, Jiayong Zhang, Danna Yu
{"title":"利用有丝分裂基因组揭示虹彩鳉的系统发育关系并分析辽宁虹彩鳉的选择压力(虹彩鳉科:龙喙鳉属)。","authors":"Yuxin Chen, Yani Yuan, Wenhui Yang, Kenneth B Storey, Jiayong Zhang, Danna Yu","doi":"10.3390/insects15110858","DOIUrl":null,"url":null,"abstract":"<p><p>Stick and leaf insects are a group among the Insecta that are famous for their extraordinary mimicry ability. Since the establishment of the Phasmatodea, their internal classification has been constantly revised. Mitochondrial genes as molecular markers have been widely used for species classification, but the phylogenetic relationships within the Phasmatodea remain to be thoroughly discussed. In the present study, five mitogenomes of Phasmatodea ranging from 15,746 bp to 16,747 bp in length were sequenced. Bayesian inference (BI) and maximum likelihood (ML) analyses were carried out based on a 13 PCGs data matrix (nt123) and a combined matrix of 13 PCGs and two rRNA genes (nt123_rRNA). The present study supports the conclusion that Phylliidae was the basal group of Neophasmatodea and confirms the monophyly of Lonchodinae and Necrosciinae, but it shows that Lonchodidae was polyphyletic. A sister group of Bacillidae and Pseudophasmatidae was also recovered. The phylogenetic tree based on the nt_123 dataset showed higher node support values. The construction of a divergent time tree in this study supported the conclusion that extant Phasmatodea originated in the Jurassic (170 Mya) and most lineages diverged after the Cretaceous-Paleogene extinction event. To explore whether the mitochondrial genes of <i>Phraortes liaoningensis</i> collected from high latitudes where low temperatures occur for eight months of the year are under selection pressure, this study used the branch-site model and the branch model to analyze the selection pressure on the 13 mitochondria protein-coding genes (PCGs). We found that both <i>ND2</i> and <i>ND4L</i> of <i>Ph. liaoningensis</i> exhibited positive selection sites using the branch-site model. This study shows that a low-temperature environment causes mitochondrial genes to be selected to meet the energy requirements for survival.</p>","PeriodicalId":13642,"journal":{"name":"Insects","volume":"15 11","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2024-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11595267/pdf/","citationCount":"0","resultStr":"{\"title\":\"Insight into the Phylogenetic Relationships of Phasmatodea and Selection Pressure Analysis of <i>Phraortes liaoningensis</i> Chen & He, 1991 (Phasmatodea: Lonchodidae) Using Mitogenomes.\",\"authors\":\"Yuxin Chen, Yani Yuan, Wenhui Yang, Kenneth B Storey, Jiayong Zhang, Danna Yu\",\"doi\":\"10.3390/insects15110858\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Stick and leaf insects are a group among the Insecta that are famous for their extraordinary mimicry ability. Since the establishment of the Phasmatodea, their internal classification has been constantly revised. Mitochondrial genes as molecular markers have been widely used for species classification, but the phylogenetic relationships within the Phasmatodea remain to be thoroughly discussed. In the present study, five mitogenomes of Phasmatodea ranging from 15,746 bp to 16,747 bp in length were sequenced. Bayesian inference (BI) and maximum likelihood (ML) analyses were carried out based on a 13 PCGs data matrix (nt123) and a combined matrix of 13 PCGs and two rRNA genes (nt123_rRNA). The present study supports the conclusion that Phylliidae was the basal group of Neophasmatodea and confirms the monophyly of Lonchodinae and Necrosciinae, but it shows that Lonchodidae was polyphyletic. A sister group of Bacillidae and Pseudophasmatidae was also recovered. The phylogenetic tree based on the nt_123 dataset showed higher node support values. The construction of a divergent time tree in this study supported the conclusion that extant Phasmatodea originated in the Jurassic (170 Mya) and most lineages diverged after the Cretaceous-Paleogene extinction event. To explore whether the mitochondrial genes of <i>Phraortes liaoningensis</i> collected from high latitudes where low temperatures occur for eight months of the year are under selection pressure, this study used the branch-site model and the branch model to analyze the selection pressure on the 13 mitochondria protein-coding genes (PCGs). We found that both <i>ND2</i> and <i>ND4L</i> of <i>Ph. liaoningensis</i> exhibited positive selection sites using the branch-site model. This study shows that a low-temperature environment causes mitochondrial genes to be selected to meet the energy requirements for survival.</p>\",\"PeriodicalId\":13642,\"journal\":{\"name\":\"Insects\",\"volume\":\"15 11\",\"pages\":\"\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2024-11-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11595267/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Insects\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.3390/insects15110858\",\"RegionNum\":2,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENTOMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Insects","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.3390/insects15110858","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENTOMOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

茎叶昆虫是昆虫纲中的一个类群,以其非凡的模仿能力而闻名。自匙吻鲟科成立以来,其内部分类一直在不断修订。线粒体基因作为分子标记已被广泛用于物种分类,但匙吻鲟科内部的系统发育关系仍有待深入探讨。在本研究中,我们对 5 个长度从 15,746 bp 到 16,747 bp 的匙形目线粒体基因组进行了测序。根据 13 个 PCGs 数据矩阵(nt123)以及 13 个 PCGs 和两个 rRNA 基因的组合矩阵(nt123_rRNA)进行了贝叶斯推断(BI)和最大似然法(ML)分析。本研究支持 Phylliidae 是 Neophasmatodea 的基干类群的结论,并证实了 Lonchodinae 和 Necrosciinae 的单系性,但也表明 Lonchodidae 具有多系性。此外,还发现了 Bacillidae 和 Pseudophasmatidae 的姊妹群。基于 nt_123 数据集的系统发生树显示了较高的节点支持值。该研究构建的分化时间树支持了现生瓣鳃纲动物起源于侏罗纪(170 Mya),大多数品系在白垩纪-古近纪灭绝事件后分化的结论。为探讨在全年八个月低温的高纬度地区采集的辽宁虹鳟线粒体基因是否存在选择压力,本研究采用分支位点模型和分支模型分析了13个线粒体蛋白编码基因(PCGs)的选择压力。利用分支位点模型,我们发现辽宁蛙的 ND2 和 ND4L 都表现出正选择位点。这项研究表明,低温环境导致线粒体基因被选择以满足生存的能量需求。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Insight into the Phylogenetic Relationships of Phasmatodea and Selection Pressure Analysis of Phraortes liaoningensis Chen & He, 1991 (Phasmatodea: Lonchodidae) Using Mitogenomes.

Stick and leaf insects are a group among the Insecta that are famous for their extraordinary mimicry ability. Since the establishment of the Phasmatodea, their internal classification has been constantly revised. Mitochondrial genes as molecular markers have been widely used for species classification, but the phylogenetic relationships within the Phasmatodea remain to be thoroughly discussed. In the present study, five mitogenomes of Phasmatodea ranging from 15,746 bp to 16,747 bp in length were sequenced. Bayesian inference (BI) and maximum likelihood (ML) analyses were carried out based on a 13 PCGs data matrix (nt123) and a combined matrix of 13 PCGs and two rRNA genes (nt123_rRNA). The present study supports the conclusion that Phylliidae was the basal group of Neophasmatodea and confirms the monophyly of Lonchodinae and Necrosciinae, but it shows that Lonchodidae was polyphyletic. A sister group of Bacillidae and Pseudophasmatidae was also recovered. The phylogenetic tree based on the nt_123 dataset showed higher node support values. The construction of a divergent time tree in this study supported the conclusion that extant Phasmatodea originated in the Jurassic (170 Mya) and most lineages diverged after the Cretaceous-Paleogene extinction event. To explore whether the mitochondrial genes of Phraortes liaoningensis collected from high latitudes where low temperatures occur for eight months of the year are under selection pressure, this study used the branch-site model and the branch model to analyze the selection pressure on the 13 mitochondria protein-coding genes (PCGs). We found that both ND2 and ND4L of Ph. liaoningensis exhibited positive selection sites using the branch-site model. This study shows that a low-temperature environment causes mitochondrial genes to be selected to meet the energy requirements for survival.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Insects
Insects Agricultural and Biological Sciences-Insect Science
CiteScore
5.10
自引率
10.00%
发文量
1013
审稿时长
21.77 days
期刊介绍: Insects (ISSN 2075-4450) is an international, peer-reviewed open access journal of entomology published by MDPI online quarterly. It publishes reviews, research papers and communications related to the biology, physiology and the behavior of insects and arthropods. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信