{"title":"雄性泰国鲉(Oryzias minutillus)遇到两种相关的雄性鱼种(Oryzias latipes 或 Oryzias woworae)后的转录组特征。","authors":"Praepilai Mittrarath, Arin Ngamniyom","doi":"10.3923/pjbs.2024.537.546","DOIUrl":null,"url":null,"abstract":"<p><p><b>Background and Objective:</b> The Thai ricefish (<i>Oryzias minutillus</i>) is the smallest <i>Oryzias</i> spp. and is important in the trophic structure of freshwater ecological systems. However, interactions with related species via gene expression profiles are unknown in this species. Here, this study reports on the first attempt to investigate the transcriptome profiles of male Thai ricefish induced by the males of two <i>Oryzias</i>. Japanese ricefish (<i>O. latipes</i>) and Daisy's ricefish (<i>O. woworae</i>, a remarkably colourful <i>Oryzias</i>) were used in the experiments. <b>Materials and Methods:</b> <i>Oryzias minutillus</i> was put in the presence of <i>O. latipes</i> (as group 1) or <i>O. woworae</i> (as group 2) for 7 days in aquaria divided by a transparent partition wall. Thai ricefish faced the same species as control group. Fish in each group were measured the distance between fish individuals of <i>O. minutillus</i> to <i>O. latipes</i> or <i>O. woworae</i>. One-way ANOVA with <i>post hoc</i> Tukey's test was used to analyse the significant differences among groups. <i>Oryzias minutillus</i> from groups 1 and 2 on day 7 were subjected to RNA-sequencing analysis via next-generation sequencing. <b>Results:</b> Long-distance encounters of fish appeared in group 2 on day 7, but there were no significant differences between fish distances. Among the differentially expressed genes, the up-and downregulated genes were more highly expressed in group 2 than in group 1. According to gene ontology term enrichment analysis, genes downregulated in the \"locomotion\" pathway were detected in group 1 but not in group 2. Conversely, downregulation of \"pigmentation\" and \"reproductive process\" was detected only in group 2. <b>Conclusion:</b> These results suggested that the different patterns of gene expression in <i>O. minutillus</i> may be affected by the presence of <i>O. latipes</i> and <i>O. woworae</i>.</p>","PeriodicalId":19800,"journal":{"name":"Pakistan Journal of Biological Sciences","volume":"27 11","pages":"537-546"},"PeriodicalIF":0.0000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Transcriptomic Profiles of Male Thai Ricefish (<i>Oryzias minutillus</i>) after Encountering Two Related Species of Males (<i>Oryzias latipes</i> or <i>Oryzias woworae</i>).\",\"authors\":\"Praepilai Mittrarath, Arin Ngamniyom\",\"doi\":\"10.3923/pjbs.2024.537.546\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Background and Objective:</b> The Thai ricefish (<i>Oryzias minutillus</i>) is the smallest <i>Oryzias</i> spp. and is important in the trophic structure of freshwater ecological systems. However, interactions with related species via gene expression profiles are unknown in this species. Here, this study reports on the first attempt to investigate the transcriptome profiles of male Thai ricefish induced by the males of two <i>Oryzias</i>. Japanese ricefish (<i>O. latipes</i>) and Daisy's ricefish (<i>O. woworae</i>, a remarkably colourful <i>Oryzias</i>) were used in the experiments. <b>Materials and Methods:</b> <i>Oryzias minutillus</i> was put in the presence of <i>O. latipes</i> (as group 1) or <i>O. woworae</i> (as group 2) for 7 days in aquaria divided by a transparent partition wall. Thai ricefish faced the same species as control group. Fish in each group were measured the distance between fish individuals of <i>O. minutillus</i> to <i>O. latipes</i> or <i>O. woworae</i>. One-way ANOVA with <i>post hoc</i> Tukey's test was used to analyse the significant differences among groups. <i>Oryzias minutillus</i> from groups 1 and 2 on day 7 were subjected to RNA-sequencing analysis via next-generation sequencing. <b>Results:</b> Long-distance encounters of fish appeared in group 2 on day 7, but there were no significant differences between fish distances. Among the differentially expressed genes, the up-and downregulated genes were more highly expressed in group 2 than in group 1. According to gene ontology term enrichment analysis, genes downregulated in the \\\"locomotion\\\" pathway were detected in group 1 but not in group 2. Conversely, downregulation of \\\"pigmentation\\\" and \\\"reproductive process\\\" was detected only in group 2. <b>Conclusion:</b> These results suggested that the different patterns of gene expression in <i>O. minutillus</i> may be affected by the presence of <i>O. latipes</i> and <i>O. woworae</i>.</p>\",\"PeriodicalId\":19800,\"journal\":{\"name\":\"Pakistan Journal of Biological Sciences\",\"volume\":\"27 11\",\"pages\":\"537-546\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Pakistan Journal of Biological Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3923/pjbs.2024.537.546\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pakistan Journal of Biological Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3923/pjbs.2024.537.546","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 0
摘要
<b>背景与目的:</b>泰国米鱼(<i>Oryzias minutillus</i>)是最小的<i>Oryzias</i>属,在淡水生态系统的营养结构中非常重要。然而,该物种通过基因表达谱与相关物种相互作用的情况尚不清楚。本研究首次尝试研究雄性泰国米鱼在两种 <i>Oryzias</i>雄鱼诱导下的转录组图谱。实验中使用了日本米鱼(<i>O. latipes</i>)和黛西米鱼(<i>O. woworae</i>,一种色彩鲜艳的鹗鱼<i>)。<b>Materials and Methods:</b><i>Oryzias minutillus</i>被放置在用透明隔墙隔开的水族箱中与 <i>O. latipes</i>(第 1 组)或 <i>O. woworae</i>(第 2 组)共处 7 天。泰国米鱼与对照组鱼种相同。测量各组鱼类个体间<i>O. minutillus</i>到<i>O. latipes</i>或<i>O. woworae</i>的距离。第 7 天,第 1 组和第 2 组的小蝼蛄通过新一代测序技术进行 RNA 序列分析。<b>结果:</b>第7天,第2组出现了鱼类的远距离相遇,但鱼类之间的距离没有显著差异。根据基因本体术语富集分析,"运动 "通路中下调的基因在第 1 组被检测到,而在第 2 组没有。<b>Conclusion:</b> These results suggested that the different patterns of gene expression in <i>O. minutillus</i> may be affected by <i>O. latipes</i> and <i>O. woworae</i>.
Transcriptomic Profiles of Male Thai Ricefish (Oryzias minutillus) after Encountering Two Related Species of Males (Oryzias latipes or Oryzias woworae).
<b>Background and Objective:</b> The Thai ricefish (<i>Oryzias minutillus</i>) is the smallest <i>Oryzias</i> spp. and is important in the trophic structure of freshwater ecological systems. However, interactions with related species via gene expression profiles are unknown in this species. Here, this study reports on the first attempt to investigate the transcriptome profiles of male Thai ricefish induced by the males of two <i>Oryzias</i>. Japanese ricefish (<i>O. latipes</i>) and Daisy's ricefish (<i>O. woworae</i>, a remarkably colourful <i>Oryzias</i>) were used in the experiments. <b>Materials and Methods:</b> <i>Oryzias minutillus</i> was put in the presence of <i>O. latipes</i> (as group 1) or <i>O. woworae</i> (as group 2) for 7 days in aquaria divided by a transparent partition wall. Thai ricefish faced the same species as control group. Fish in each group were measured the distance between fish individuals of <i>O. minutillus</i> to <i>O. latipes</i> or <i>O. woworae</i>. One-way ANOVA with <i>post hoc</i> Tukey's test was used to analyse the significant differences among groups. <i>Oryzias minutillus</i> from groups 1 and 2 on day 7 were subjected to RNA-sequencing analysis via next-generation sequencing. <b>Results:</b> Long-distance encounters of fish appeared in group 2 on day 7, but there were no significant differences between fish distances. Among the differentially expressed genes, the up-and downregulated genes were more highly expressed in group 2 than in group 1. According to gene ontology term enrichment analysis, genes downregulated in the "locomotion" pathway were detected in group 1 but not in group 2. Conversely, downregulation of "pigmentation" and "reproductive process" was detected only in group 2. <b>Conclusion:</b> These results suggested that the different patterns of gene expression in <i>O. minutillus</i> may be affected by the presence of <i>O. latipes</i> and <i>O. woworae</i>.
期刊介绍:
Pakistan Journal of Biological Sciences (PJBS) is an international, peer-reviewed and well indexed scientific journal seeks to promote and disseminate the knowledge of biological sciences by publishing outstanding research in the field. Scope of the journal includes: Cell biology, developmental biology, structural biology, microbiology, entomology, toxicology, molecular biology & genetics, biochemistry, biotechnology, biodiversity, ecology, marine biology, plant biology and bioinformatics.