Erodium cicutarium (Linnaeus) l' Héritier ex Aiton 1789（Geraniaceae）的完整叶绿体基因组：基因组特征和系统发育考虑。

Pub Date : 2024-10-24 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2420847

Jiawen Cui, Shengwei Chen, Yujie Wu, Ting Guo, Lei Zhang

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摘要

Erodium cicutarium 是一种一年生草本植物，因其在传统医药中的应用而备受重视。然而，E. cicutarium 的叶绿体基因组尚未见报道。在这项研究中，我们利用 Illumina 测序读数组装了 Erodium cicutarium 的叶绿体基因组。叶绿体基因组长 114,652 bp，包含 111 个完整基因，总 GC 含量为 39.1%。在最大似然法（ML）树和贝叶斯推断法（BI）树中，13 个 Erodium 物种分为三个主要支系，其中 E. cicutarium 和 E. carvifolium 构成一个单系群，表明这两个物种之间关系密切。本研究提出的 E. cicutarium cp 基因组为 Erodium 奠定了良好的基础。

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The complete chloroplast genome of Erodium cicutarium (Linnaeus) l' Héritier ex Aiton 1789 (Geraniaceae): genome characterization and phylogenetic consideration.

Erodium cicutarium is an annual herbaceous plant valued for its applications in traditional medicine. However, the chloroplast genome of E. cicutarium has yet to be reported. In this study, we assembled chloroplast genomes of Erodium cicutarium using Illumina sequencing reads. The chloroplast genome was 114,652 bp long, harbored 111 complete genes, and its overall GC content was 39.1%. In Maximum Likelihood (ML) and Bayesian inference (BI) trees, the 13 Erodium species divided into three main clades, with E. cicutarium and E. carvifolium forming a monophyletic group, suggesting a close relationship between the two species. The E. cicutarium cp genome presented in this study lays a good foundation for the Erodium.

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