Runoff variation alters estuarine sediment microbiome and nitrogen removal processes by affecting salinity.

Runoff variations shape the dynamics of the estuarine environmental factors, profoundly influencing the nitrogen cycle in estuarine sediments. However, our understanding of how these changes regulate microbially-mediated nitrogen removal processes remains limited. In this study, the impacts of changes in environmental factors caused by normal and low runoffs on denitrification and anammox in sediments of the Liao River Estuary in China, were investigated, using continuous-flow experiments combined with ¹⁵N tracing techniques and molecular methods. Results indicated that denitrification was the main nitrogen removal process in estuarine sediments under both runoff conditions. Elevated salinity under low runoff condition increased the abundance of nitrifying bacteria (Nitrospina, Nitrosomonas and Nitrosomonadaceae), thereby promoting the coupled nitrification-denitrification nitrogen removal process. Furthermore, seawater intrusion under low runoff contributed to dilute nitrite concentrations, resulting in decreased denitrification rates in sediments. Overall, this study highlighted the impacts of runoff variations on biological nitrogen removal process through affecting environmental factors, gene abundance and microbial community in the estuary.