用于分析 DNA、RNA 和蛋白质的基本 R 软件包简明指南》(A Concise Guide to Essential R Packages for Analyses of DNA, RNA, and Proteins)。

IF 3.7 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Eng Wee Chua , Der Jiun Ooi , Nor Azlan Nor Muhammad
{"title":"用于分析 DNA、RNA 和蛋白质的基本 R 软件包简明指南》(A Concise Guide to Essential R Packages for Analyses of DNA, RNA, and Proteins)。","authors":"Eng Wee Chua ,&nbsp;Der Jiun Ooi ,&nbsp;Nor Azlan Nor Muhammad","doi":"10.1016/j.mocell.2024.100120","DOIUrl":null,"url":null,"abstract":"<div><div>R is widely regarded as unrivaled by other high-level programming languages for its statistical functions. The popularity of R as a statistical language has led many to overlook its applications outside the statistical realm. In this brief review, we present a list of R packages for supporting projects that entail analyses of DNA, RNA, and proteins. These R packages span the gamut of important molecular techniques, from routine quantitative polymerase chain reaction (qPCR) and Western blotting to high-throughput sequencing and proteomics generating very large datasets. The text-mining power of R can also be harnessed to facilitate literature reviews and predict future research trends and avenues. We encourage researchers to make full use of R in their work, given the versatility of the language, as well as its straightforward syntax which eases the initial learning curve.</div></div>","PeriodicalId":18795,"journal":{"name":"Molecules and Cells","volume":"47 11","pages":"Article 100120"},"PeriodicalIF":3.7000,"publicationDate":"2024-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A concise guide to essential R packages for analyses of DNA, RNA, and proteins\",\"authors\":\"Eng Wee Chua ,&nbsp;Der Jiun Ooi ,&nbsp;Nor Azlan Nor Muhammad\",\"doi\":\"10.1016/j.mocell.2024.100120\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>R is widely regarded as unrivaled by other high-level programming languages for its statistical functions. The popularity of R as a statistical language has led many to overlook its applications outside the statistical realm. In this brief review, we present a list of R packages for supporting projects that entail analyses of DNA, RNA, and proteins. These R packages span the gamut of important molecular techniques, from routine quantitative polymerase chain reaction (qPCR) and Western blotting to high-throughput sequencing and proteomics generating very large datasets. The text-mining power of R can also be harnessed to facilitate literature reviews and predict future research trends and avenues. We encourage researchers to make full use of R in their work, given the versatility of the language, as well as its straightforward syntax which eases the initial learning curve.</div></div>\",\"PeriodicalId\":18795,\"journal\":{\"name\":\"Molecules and Cells\",\"volume\":\"47 11\",\"pages\":\"Article 100120\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2024-10-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Molecules and Cells\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1016847824001456\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecules and Cells","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1016847824001456","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

R 的统计功能被广泛认为是其他高级编程语言无法比拟的。R 作为一种统计语言的流行使许多人忽视了它在统计领域之外的应用。在这篇简短的综述中,我们列出了一系列 R 软件包,用于支持涉及 DNA、RNA 和蛋白质分析的项目。这些 R 软件包涵盖了各种重要的分子技术,从常规的定量 PCR 和 Western 印迹到产生超大数据集的高通量测序和蛋白质组学。我们还可以利用 R 的文本挖掘功能来促进文献综述,并预测未来的研究趋势和途径。我们鼓励研究人员在工作中充分利用 R 语言,因为这种语言用途广泛,而且语法简单明了,可以简化初始学习曲线。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A concise guide to essential R packages for analyses of DNA, RNA, and proteins
R is widely regarded as unrivaled by other high-level programming languages for its statistical functions. The popularity of R as a statistical language has led many to overlook its applications outside the statistical realm. In this brief review, we present a list of R packages for supporting projects that entail analyses of DNA, RNA, and proteins. These R packages span the gamut of important molecular techniques, from routine quantitative polymerase chain reaction (qPCR) and Western blotting to high-throughput sequencing and proteomics generating very large datasets. The text-mining power of R can also be harnessed to facilitate literature reviews and predict future research trends and avenues. We encourage researchers to make full use of R in their work, given the versatility of the language, as well as its straightforward syntax which eases the initial learning curve.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Molecules and Cells
Molecules and Cells 生物-生化与分子生物学
CiteScore
6.60
自引率
10.50%
发文量
83
审稿时长
2.3 months
期刊介绍: Molecules and Cells is an international on-line open-access journal devoted to the advancement and dissemination of fundamental knowledge in molecular and cellular biology. It was launched in 1990 and ISO abbreviation is "Mol. Cells". Reports on a broad range of topics of general interest to molecular and cell biologists are published. It is published on the last day of each month by the Korean Society for Molecular and Cellular Biology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信