{"title":"对跨越适应谷的可蜕变自适应运动的一般多尺度描述。","authors":"Manuel Esser, Anna Kraut","doi":"10.1007/s00285-024-02143-3","DOIUrl":null,"url":null,"abstract":"<p><p>We consider a stochastic individual-based model of adaptive dynamics on a finite trait graph <math><mrow><mi>G</mi> <mo>=</mo> <mo>(</mo> <mi>V</mi> <mo>,</mo> <mi>E</mi> <mo>)</mo></mrow> </math> . The evolution is driven by a linear birth rate, a density dependent logistic death rate and the possibility of mutations along the directed edges in E. We study the limit of small mutation rates for a simultaneously diverging population size. Closing the gap between Bovier et al. (Ann Appl Probab 29(6):3541-358, 2019) and Coquille et al. (Electron J Probab 26:1-37, 2021) we give a precise description of transitions between evolutionary stable conditions (ESC), where multiple mutations are needed to cross a valley in the fitness landscape. The system shows a metastable behaviour on several divergent time scales, corresponding to the widths of these fitness valleys. We develop the framework of a meta graph that is constituted of ESCs and possible metastable transitions between them. This allows for a concise description of the multi-scale jump chain arising from concatenating several jumps. Finally, for each of the various time scales, we prove the convergence of the population process to a Markov jump process visiting only ESCs of sufficiently high stability.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11445367/pdf/","citationCount":"0","resultStr":"{\"title\":\"A general multi-scale description of metastable adaptive motion across fitness valleys.\",\"authors\":\"Manuel Esser, Anna Kraut\",\"doi\":\"10.1007/s00285-024-02143-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We consider a stochastic individual-based model of adaptive dynamics on a finite trait graph <math><mrow><mi>G</mi> <mo>=</mo> <mo>(</mo> <mi>V</mi> <mo>,</mo> <mi>E</mi> <mo>)</mo></mrow> </math> . The evolution is driven by a linear birth rate, a density dependent logistic death rate and the possibility of mutations along the directed edges in E. We study the limit of small mutation rates for a simultaneously diverging population size. Closing the gap between Bovier et al. (Ann Appl Probab 29(6):3541-358, 2019) and Coquille et al. (Electron J Probab 26:1-37, 2021) we give a precise description of transitions between evolutionary stable conditions (ESC), where multiple mutations are needed to cross a valley in the fitness landscape. The system shows a metastable behaviour on several divergent time scales, corresponding to the widths of these fitness valleys. We develop the framework of a meta graph that is constituted of ESCs and possible metastable transitions between them. This allows for a concise description of the multi-scale jump chain arising from concatenating several jumps. Finally, for each of the various time scales, we prove the convergence of the population process to a Markov jump process visiting only ESCs of sufficiently high stability.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11445367/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.1007/s00285-024-02143-3\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1007/s00285-024-02143-3","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0
摘要
我们考虑了一个基于随机个体的有限特征图 G = ( V , E ) 上的适应动态模型。演化由线性出生率、依赖密度的对数死亡率以及 E 中有向边的突变可能性驱动。我们研究了同时发散的种群规模下的小突变率极限。为了缩小 Bovier 等人(Ann Appl Probab 29(6):3541-358, 2019)和 Coquille 等人(Electron J Probab 26:1-37, 2021)之间的差距,我们给出了进化稳定条件(ESC)之间过渡的精确描述,在ESC条件下,需要多次突变才能越过适应性景观中的山谷。该系统在几个不同的时间尺度上表现出一种易变行为,这些时间尺度与这些适应度谷的宽度相对应。我们建立了一个元图框架,它由 ESC 和它们之间可能的蜕变构成。这样就可以简明扼要地描述由多个跃迁串联而成的多尺度跃迁链。最后,对于每种不同的时间尺度,我们都证明了种群过程收敛于一个马尔可夫跳跃过程,该过程只访问具有足够高稳定性的ESC。
A general multi-scale description of metastable adaptive motion across fitness valleys.
We consider a stochastic individual-based model of adaptive dynamics on a finite trait graph . The evolution is driven by a linear birth rate, a density dependent logistic death rate and the possibility of mutations along the directed edges in E. We study the limit of small mutation rates for a simultaneously diverging population size. Closing the gap between Bovier et al. (Ann Appl Probab 29(6):3541-358, 2019) and Coquille et al. (Electron J Probab 26:1-37, 2021) we give a precise description of transitions between evolutionary stable conditions (ESC), where multiple mutations are needed to cross a valley in the fitness landscape. The system shows a metastable behaviour on several divergent time scales, corresponding to the widths of these fitness valleys. We develop the framework of a meta graph that is constituted of ESCs and possible metastable transitions between them. This allows for a concise description of the multi-scale jump chain arising from concatenating several jumps. Finally, for each of the various time scales, we prove the convergence of the population process to a Markov jump process visiting only ESCs of sufficiently high stability.