应用空间转录组学和人工智能开展胰腺癌综合管理。

Advances in cancer research Pub Date : 2024-01-01 Epub Date: 2024-07-09 DOI:10.1016/bs.acr.2024.06.007
Rishabh Maurya, Isha Chug, Vignesh Vudatha, António M Palma
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引用次数: 0

摘要

癌症是一种与细胞过程和基因表达密切相关的复杂疾病。随着单细胞测序和连续荧光原位杂交(seqFISH)等技术的发展,根据细胞基因表达更精确地绘制细胞位置图成为可能。此外,近年来还开发了许多工具,通过全面整合机器学习和人工智能来分析这些庞大的数据集。由于这些工具分析的是测序数据,因此它们提供了分析任何组织的机会,无论其来源如何。将其应用到癌症环境中,基于人工智能的空间转录组分析可能有助于我们了解肿瘤微环境中的细胞间通讯。这种分析的另一个优势是可以确定新的生物标记物和治疗目标。将这种分析与其他全息数据以及磁共振成像等常规检查相结合,可以帮助医生更早地诊断肿瘤,并为胰腺癌患者制定更加个性化的治疗方案。在这篇综述中,我们将概述胰腺癌,描述空间转录组学和人工智能如何被用于研究胰腺癌,并举例说明如何整合这些工具帮助医生以更个性化的方法管理胰腺癌。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Applications of spatial transcriptomics and artificial intelligence to develop integrated management of pancreatic cancer.

Cancer is a complex disease intrinsically associated with cellular processes and gene expression. With the development of techniques such as single-cell sequencing and sequential fluorescence in situ hybridization (seqFISH), it was possible to map the location of cells based on their gene expression with more precision. Moreover, in recent years, many tools have been developed to analyze these extensive datasets by integrating machine learning and artificial intelligence in a comprehensive manner. Since these tools analyze sequencing data, they offer the chance to analyze any tissue regardless of its origin. By applying this to cancer settings, spatial transcriptomic analysis based on artificial intelligence may help us understand cell-cell communications within the tumor microenvironment. Another advantage of this analysis is the identification of new biomarkers and therapeutic targets. The integration of such analysis with other omics data and with routine exams such as magnetic resonance imaging can help physicians with the earlier diagnosis of tumors as well as establish a more personalized treatment for pancreatic cancer patients. In this review, we give an overview description of pancreatic cancer, describe how spatial transcriptomics and artificial intelligence have been used to study pancreatic cancer and provide examples of how integrating these tools may help physicians manage pancreatic cancer in a more personalized approach.

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