{"title":"Dongia sedimenti sp.","authors":"Xueting Jiang, Luyao Ruan, Ningning Wu, Dongmei Mao, Jian He, Shimei Wang, Jiangdong Jiang, Qirong Shen","doi":"10.1099/ijsem.0.006532","DOIUrl":null,"url":null,"abstract":"<p><p>A Gram-stain-negative, non-spore-forming and strictly aerobic bacterial strain, designated R-7<sup>T</sup>, was isolated from river sediment in Wuxi, Jiangsu, PR China. Cells (1.6-3.8 µm long and 0.6-0.8 µm wide) were slightly curved to straight rods and motile by means of a polar flagellum. The strain grew optimally on Reasoner's 2A medium at 30 °C, pH 7.0 and with 1.0% (w/v) NaCl. Strain R-7<sup>T</sup> exhibited closest 16S rRNA gene sequence similarities to <i>Dongia mobilis</i> CGMCC 1.7660<sup>T</sup> (95.4%), <i>D. rigui</i> 04SU4-P<sup>T</sup> (94.6%) and <i>D. soli</i> D78<sup>T</sup> (93.8%). The phylogenetic trees based on genomic and 16S rRNA gene sequences showed that strain R-7<sup>T</sup> was clustered in the genus <i>Dongia</i>. The obtained average nucleotide identity and digital DNA-DNA hybridization values between R-7<sup>T</sup> and the three type strains of the genus <i>Dongia</i> were 73.4, 72.8 and 72.4% and 19.5, 19.0 and 18.7%, respectively. The major respiratory quinone was Q-10. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, three unidentified aminolipids, two unidentified aminophospholipids and nine unidentified polar lipids. The major cellular fatty acids (>5% of the total) were cyclo-C<sub>19 : 0</sub> <i> ω</i>8<i>c</i>, C<sub>16 : 0</sub> and C<sub>16 : 0</sub> 2-OH. The DNA G+C content was 65.5 mol%. On the basis of the evidence presented in this study, strain R-7<sup>T</sup> represents a novel species of the genus <i>Dongia</i>, for which the name <i>Dongia sedimenti</i> sp. nov. is proposed, with strain R-7<sup>T</sup> (=KCTC 8082<sup>T</sup>=MCCC 1K08805<sup>T</sup>) as the type strain.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Dongia sedimenti</i> sp. nov., isolated from river sediment.\",\"authors\":\"Xueting Jiang, Luyao Ruan, Ningning Wu, Dongmei Mao, Jian He, Shimei Wang, Jiangdong Jiang, Qirong Shen\",\"doi\":\"10.1099/ijsem.0.006532\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A Gram-stain-negative, non-spore-forming and strictly aerobic bacterial strain, designated R-7<sup>T</sup>, was isolated from river sediment in Wuxi, Jiangsu, PR China. Cells (1.6-3.8 µm long and 0.6-0.8 µm wide) were slightly curved to straight rods and motile by means of a polar flagellum. The strain grew optimally on Reasoner's 2A medium at 30 °C, pH 7.0 and with 1.0% (w/v) NaCl. Strain R-7<sup>T</sup> exhibited closest 16S rRNA gene sequence similarities to <i>Dongia mobilis</i> CGMCC 1.7660<sup>T</sup> (95.4%), <i>D. rigui</i> 04SU4-P<sup>T</sup> (94.6%) and <i>D. soli</i> D78<sup>T</sup> (93.8%). The phylogenetic trees based on genomic and 16S rRNA gene sequences showed that strain R-7<sup>T</sup> was clustered in the genus <i>Dongia</i>. The obtained average nucleotide identity and digital DNA-DNA hybridization values between R-7<sup>T</sup> and the three type strains of the genus <i>Dongia</i> were 73.4, 72.8 and 72.4% and 19.5, 19.0 and 18.7%, respectively. The major respiratory quinone was Q-10. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, three unidentified aminolipids, two unidentified aminophospholipids and nine unidentified polar lipids. The major cellular fatty acids (>5% of the total) were cyclo-C<sub>19 : 0</sub> <i> ω</i>8<i>c</i>, C<sub>16 : 0</sub> and C<sub>16 : 0</sub> 2-OH. The DNA G+C content was 65.5 mol%. On the basis of the evidence presented in this study, strain R-7<sup>T</sup> represents a novel species of the genus <i>Dongia</i>, for which the name <i>Dongia sedimenti</i> sp. nov. is proposed, with strain R-7<sup>T</sup> (=KCTC 8082<sup>T</sup>=MCCC 1K08805<sup>T</sup>) as the type strain.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006532\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006532","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Dongia sedimenti sp. nov., isolated from river sediment.
A Gram-stain-negative, non-spore-forming and strictly aerobic bacterial strain, designated R-7T, was isolated from river sediment in Wuxi, Jiangsu, PR China. Cells (1.6-3.8 µm long and 0.6-0.8 µm wide) were slightly curved to straight rods and motile by means of a polar flagellum. The strain grew optimally on Reasoner's 2A medium at 30 °C, pH 7.0 and with 1.0% (w/v) NaCl. Strain R-7T exhibited closest 16S rRNA gene sequence similarities to Dongia mobilis CGMCC 1.7660T (95.4%), D. rigui 04SU4-PT (94.6%) and D. soli D78T (93.8%). The phylogenetic trees based on genomic and 16S rRNA gene sequences showed that strain R-7T was clustered in the genus Dongia. The obtained average nucleotide identity and digital DNA-DNA hybridization values between R-7T and the three type strains of the genus Dongia were 73.4, 72.8 and 72.4% and 19.5, 19.0 and 18.7%, respectively. The major respiratory quinone was Q-10. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, three unidentified aminolipids, two unidentified aminophospholipids and nine unidentified polar lipids. The major cellular fatty acids (>5% of the total) were cyclo-C19 : 0 ω8c, C16 : 0 and C16 : 0 2-OH. The DNA G+C content was 65.5 mol%. On the basis of the evidence presented in this study, strain R-7T represents a novel species of the genus Dongia, for which the name Dongia sedimenti sp. nov. is proposed, with strain R-7T (=KCTC 8082T=MCCC 1K08805T) as the type strain.