{"title":"基于基因组的福州单胞菌(Sphingomonas fuzhouensis sp.","authors":"Ling Yao, Guo-Hong Liu, Shu-Yi Zhang, Peng Gao, Christopher Rensing, Qiu-E Yang, Shun-Gui Zhou","doi":"10.1007/s10482-024-02017-0","DOIUrl":null,"url":null,"abstract":"<div><p>Two facultatively aerobic strains, designated SGZ-02<sup>T</sup> and SGZ-792<sup>T</sup>, were isolated from plant <i>Pennisetum</i> sp., exhibiting the highest 16S rRNA gene sequence similarities with the type strains of <i>Sphingomonas zeae</i> LMG 28739<sup>T</sup> (98.6%) and <i>Massilia forsythiae</i> NBRC 114511<sup>T</sup> (98.4%), respectively. SGZ-02<sup>T</sup> grew between 5 and 45 °C, pH 5.0–11.0 and tolerated NaCl concentrations of 0–4% (w/v), whereas SGZ-792<sup>T</sup> thrived at 5–40 °C, pH 5.0–11.0 and NaCl tolerance to 0–3.5% (w/v). The major quinone of SGZ-02<sup>T</sup> was ubiquinone-10, with the dominant fatty acids being C<sub>16:0</sub> (13.5%), Summed Feature 3 (6.3%), C<sub>14:0</sub>2-OH (5.3%) and Summed Feature 8 (66.3%). SGZ-792<sup>T</sup> predominantly contained ubiquinone-8, with major fatty acids being C<sub>16:0</sub> (20.3%), Summed Feature 3 (5.0%) and Summed Feature 8 (54.7%). Average nucleotide identity and digital DNA–DNA hybridization values between two strains and their closest references strains were below the bacterial species threshold. Based on genotypic and phenotypic characteristics, strains SGZ-02<sup>T</sup> and SGZ-792<sup>T</sup> are proposed as novel species within the genera <i>Sphingomonas</i> and <i>Massilia</i>, respectively. The suggested names for the new species are <i>Sphingomonas fuzhouensis</i> sp. nov. (SGZ-02<sup>T</sup> = GDMCC 1.4033<sup>T</sup> = JCM 36769<sup>T</sup>) and <i>Massilia phyllosphaerae</i> sp. nov. (SGZ-792<sup>T</sup> = GDMCC 1.4211<sup>T</sup> = JCM 36643<sup>T</sup>), respectively.</p></div>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 1","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-based taxonomy and functional prediction of Sphingomonas fuzhouensis sp. nov. and Massilia phyllosphaerae sp. nov. isolated from Pennisetum sp. with plant growth-promoting potential\",\"authors\":\"Ling Yao, Guo-Hong Liu, Shu-Yi Zhang, Peng Gao, Christopher Rensing, Qiu-E Yang, Shun-Gui Zhou\",\"doi\":\"10.1007/s10482-024-02017-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Two facultatively aerobic strains, designated SGZ-02<sup>T</sup> and SGZ-792<sup>T</sup>, were isolated from plant <i>Pennisetum</i> sp., exhibiting the highest 16S rRNA gene sequence similarities with the type strains of <i>Sphingomonas zeae</i> LMG 28739<sup>T</sup> (98.6%) and <i>Massilia forsythiae</i> NBRC 114511<sup>T</sup> (98.4%), respectively. SGZ-02<sup>T</sup> grew between 5 and 45 °C, pH 5.0–11.0 and tolerated NaCl concentrations of 0–4% (w/v), whereas SGZ-792<sup>T</sup> thrived at 5–40 °C, pH 5.0–11.0 and NaCl tolerance to 0–3.5% (w/v). The major quinone of SGZ-02<sup>T</sup> was ubiquinone-10, with the dominant fatty acids being C<sub>16:0</sub> (13.5%), Summed Feature 3 (6.3%), C<sub>14:0</sub>2-OH (5.3%) and Summed Feature 8 (66.3%). SGZ-792<sup>T</sup> predominantly contained ubiquinone-8, with major fatty acids being C<sub>16:0</sub> (20.3%), Summed Feature 3 (5.0%) and Summed Feature 8 (54.7%). Average nucleotide identity and digital DNA–DNA hybridization values between two strains and their closest references strains were below the bacterial species threshold. Based on genotypic and phenotypic characteristics, strains SGZ-02<sup>T</sup> and SGZ-792<sup>T</sup> are proposed as novel species within the genera <i>Sphingomonas</i> and <i>Massilia</i>, respectively. The suggested names for the new species are <i>Sphingomonas fuzhouensis</i> sp. nov. (SGZ-02<sup>T</sup> = GDMCC 1.4033<sup>T</sup> = JCM 36769<sup>T</sup>) and <i>Massilia phyllosphaerae</i> sp. nov. (SGZ-792<sup>T</sup> = GDMCC 1.4211<sup>T</sup> = JCM 36643<sup>T</sup>), respectively.</p></div>\",\"PeriodicalId\":50746,\"journal\":{\"name\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"volume\":\"118 1\",\"pages\":\"\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2024-09-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10482-024-02017-0\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10482-024-02017-0","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Genome-based taxonomy and functional prediction of Sphingomonas fuzhouensis sp. nov. and Massilia phyllosphaerae sp. nov. isolated from Pennisetum sp. with plant growth-promoting potential
Two facultatively aerobic strains, designated SGZ-02T and SGZ-792T, were isolated from plant Pennisetum sp., exhibiting the highest 16S rRNA gene sequence similarities with the type strains of Sphingomonas zeae LMG 28739T (98.6%) and Massilia forsythiae NBRC 114511T (98.4%), respectively. SGZ-02T grew between 5 and 45 °C, pH 5.0–11.0 and tolerated NaCl concentrations of 0–4% (w/v), whereas SGZ-792T thrived at 5–40 °C, pH 5.0–11.0 and NaCl tolerance to 0–3.5% (w/v). The major quinone of SGZ-02T was ubiquinone-10, with the dominant fatty acids being C16:0 (13.5%), Summed Feature 3 (6.3%), C14:02-OH (5.3%) and Summed Feature 8 (66.3%). SGZ-792T predominantly contained ubiquinone-8, with major fatty acids being C16:0 (20.3%), Summed Feature 3 (5.0%) and Summed Feature 8 (54.7%). Average nucleotide identity and digital DNA–DNA hybridization values between two strains and their closest references strains were below the bacterial species threshold. Based on genotypic and phenotypic characteristics, strains SGZ-02T and SGZ-792T are proposed as novel species within the genera Sphingomonas and Massilia, respectively. The suggested names for the new species are Sphingomonas fuzhouensis sp. nov. (SGZ-02T = GDMCC 1.4033T = JCM 36769T) and Massilia phyllosphaerae sp. nov. (SGZ-792T = GDMCC 1.4211T = JCM 36643T), respectively.
期刊介绍:
Antonie van Leeuwenhoek publishes papers on fundamental and applied aspects of microbiology. Topics of particular interest include: taxonomy, structure & development; biochemistry & molecular biology; physiology & metabolic studies; genetics; ecological studies; especially molecular ecology; marine microbiology; medical microbiology; molecular biological aspects of microbial pathogenesis and bioinformatics.