DNA Barcoding of Fish in the Ib River, One of the Important Tributaries of the Mahanadi River, India

Abstract

The Ib River is an important tributary of the Mahanadi River. The aim of the present study was to establish a reliable barcoding reference database for fish in Ib River. A total of 134 specimens, belonging to 42 species within 32 genera, 18 families, and 11 orders, were subjected to PCR amplification of the target region of mitochondrial genome and sequenced. The average length of the 134 barcodes was 648 bp. The average K2P distances within species, genera, and families were 0.13, 9.94, and 16.79%, respectively. The average interspecific distance was approximately 76.46 times higher than the mean intraspecific distance. The Barcode Index Number (BIN) discordance report showed that 134 specimens represented 42 BINs, of which 13 were singletons, 29 were taxonomically concordant while no species taxonomically discordant in our dataset. The barcode gap analysis demonstrated that 100% of the fish species examined could be discriminated by DNA barcoding. These results provide new insights into fish diversity in the Ib River and can provide a basis for the development of further studies on fish fauna.