{"title":"Pachylophus rufescens (de Meijere, 1904) (Diptera:Chloropidae) 的完整线粒体基因组。","authors":"Jiuzhou Liu, Xiaodong Cai, Xiaoyan Liu, Ding Yang","doi":"10.1080/23802359.2024.2397985","DOIUrl":null,"url":null,"abstract":"<p><p><i>Pachylophus</i> belongs to the subfamily Chloropinae, the second most diverse subfamily of Chloropidae. However, there have been few complete mitochondrial genomes of Chloropinae reported in the public database. Consequently, we sequenced and annotated the complete mitochondrial genome of <i>Pachylophus rufescens</i> (de Meijere, 1904). The whole mitochondrial genome is 17, 926 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) and two ribosomal RNAs (rRNAs). The mitochondrial genome exhibits high A + T bias, accounting for 79.7% of its entirety. All PCGs start with ATN codon and end with TAN or incomplete stop codon TA or single T. The Maximum likelihood phylogenetic tree revealed a close relationship between <i>Pachylophus</i> and <i>Cetema</i>. This study contributes to the expansion of the mitochondrial genome library of Chloropinae, providing a valuable resource for gaining insights into the evolutionary history of Chloropidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5000,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370664/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete mitochondrial genome of <i>Pachylophus rufescen</i>s (de Meijere, 1904) (Diptera:Chloropidae).\",\"authors\":\"Jiuzhou Liu, Xiaodong Cai, Xiaoyan Liu, Ding Yang\",\"doi\":\"10.1080/23802359.2024.2397985\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Pachylophus</i> belongs to the subfamily Chloropinae, the second most diverse subfamily of Chloropidae. However, there have been few complete mitochondrial genomes of Chloropinae reported in the public database. Consequently, we sequenced and annotated the complete mitochondrial genome of <i>Pachylophus rufescens</i> (de Meijere, 1904). The whole mitochondrial genome is 17, 926 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) and two ribosomal RNAs (rRNAs). The mitochondrial genome exhibits high A + T bias, accounting for 79.7% of its entirety. All PCGs start with ATN codon and end with TAN or incomplete stop codon TA or single T. The Maximum likelihood phylogenetic tree revealed a close relationship between <i>Pachylophus</i> and <i>Cetema</i>. This study contributes to the expansion of the mitochondrial genome library of Chloropinae, providing a valuable resource for gaining insights into the evolutionary history of Chloropidae.</p>\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-08-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370664/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2397985\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2397985","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
摘要
Pachylophus 属于 Chloropinae 亚科,是 Chloropidae 中种类第二多的亚科。然而,在公共数据库中,鲜有完整的叶绿目线粒体基因组的报道。因此,我们对 Pachylophus rufescens (de Meijere, 1904) 的完整线粒体基因组进行了测序和注释。线粒体基因组全长 17 926 bp,由 13 个蛋白质编码基因(PCGs)、22 个转运核糖核酸(tRNAs)和 2 个核糖体核糖核酸(rRNAs)组成。线粒体基因组具有较高的 A + T 偏倚,占整个基因组的 79.7%。所有 PCGs 都以 ATN 密码子开始,以 TAN 或不完全终止密码子 TA 或单 T 结尾。最大似然系统发生树显示 Pachylophus 与 Cetema 关系密切。这项研究有助于扩充叶绿目线粒体基因组文库,为深入了解叶绿目进化历史提供了宝贵的资源。
The complete mitochondrial genome of Pachylophus rufescens (de Meijere, 1904) (Diptera:Chloropidae).
Pachylophus belongs to the subfamily Chloropinae, the second most diverse subfamily of Chloropidae. However, there have been few complete mitochondrial genomes of Chloropinae reported in the public database. Consequently, we sequenced and annotated the complete mitochondrial genome of Pachylophus rufescens (de Meijere, 1904). The whole mitochondrial genome is 17, 926 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) and two ribosomal RNAs (rRNAs). The mitochondrial genome exhibits high A + T bias, accounting for 79.7% of its entirety. All PCGs start with ATN codon and end with TAN or incomplete stop codon TA or single T. The Maximum likelihood phylogenetic tree revealed a close relationship between Pachylophus and Cetema. This study contributes to the expansion of the mitochondrial genome library of Chloropinae, providing a valuable resource for gaining insights into the evolutionary history of Chloropidae.
期刊介绍:
This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.