Vernonia volkameriifolia DC. 1836（菊科）完整叶绿体基因组的特征和系统发育分析。1836（菊科）。

Pub Date : 2024-08-27 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2390622

Li Yong, Ze Liu, Haimei Chen, Bin Wang

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摘要

Vernonia volkameriifolia DC.Vernonia volkameriifolia DC（1836 年）是菊科 Vernonioideae 亚科的一种木本灌木。V. volkameriifolia 的完整叶绿体基因组长达 152,934 bp，由四个亚区组成：一个大的单拷贝区（84,035 bp）、一个小的单拷贝区（18,543 bp）和一对反向重复区（25,178 bp）。在 V. volkameriifolia 的叶绿体基因组中，发现了 114 个独特的基因，包括 80 个独特的蛋白质编码基因、4 个核糖体 RNA（rRNA）基因和 30 个转运 RNA（tRNA）基因。根据 Vernonieae 部族中六个相关类群的完整叶绿体基因组进行的系统发育分析表明，V. volkameriifolia 与 Vernonia parishii 和 Strobocalyx arborea 的关系更为密切。这项工作首次报道了 Vernonia volkameriifolia 的叶绿体基因组，为丰富 Vernonia 属的基因组数据做出了贡献。

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Characteristics and phylogenetic analysis of the complete chloroplast genome of Vernonia volkameriifolia DC. 1836 (Asteraceae).

Vernonia volkameriifolia DC. 1836, is a woody shrub of the subfamily Vernonioideae within the family Asteraceae. The complete chloroplast genome of V. volkameriifolia spans 152,934 bp, comprising four subregions: a large single-copy region (84,035 bp), a small single-copy region (18,543 bp), and a pair of inverted repeats (25,178 bp). Within the chloroplast genome of V. volkameriifolia, 114 unique genes were identified, including 80 unique protein-encoding genes, four ribosomal RNA (rRNA) genes, and 30 transfer RNA (tRNA) genes. Phylogenetic analysis based on the complete chloroplast genome of six related taxa in the Vernonieae tribe indicates that V. volkameriifolia show closer relationships with Vernonia parishii and Strobocalyx arborea. The first chloroplast genome of V. volkameriifolia was reported in this work, contributing to the enrichment of genomic data for the genus Vernonia.

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