聚糖的功能意义及其整理:意大利帕多瓦第 16 届国际生物化学年会研讨会的启示。

IF 3.4 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F Aoki-Kinoshita, Cecilia Arighi, Kristian B Axelsen, Evan Bolton, Emily Bordeleau, Nathan J Edwards, Elisa Fadda, Ten Feizi, Catherine Hayes, Callum M Ives, Hiren J Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frederique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Martin, Akul Y Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder
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引用次数: 0

摘要

蛋白质糖基化的动态变化影响着人类的健康和疾病的发展。然而,目前捕捉疾病和表型信息的资源主要集中在分子生物学中心教条(DNA、RNA、蛋白质)中的大分子上。为了更好地了解生物体,有必要了解聚糖和糖基化对生物过程的功能影响。第 16 届国际生物组化年会期间举办了题为 "聚糖的功能影响及其整理 "的研讨会,讨论全球范围内正在开展的与聚糖功能整理相关的活动。来自 20 多个项目和生物信息学资源的主题专家、工具开发人员和生物学家参加了此次研讨会。与会者讨论了各自资源的四个关键主题:(i) 他们如何从出版物和其他来源收集聚糖功能相关数据,(ii) 他们希望获得哪类数据,(iii) 他们目前拥有哪些数据,以及 (iv) 他们使用哪些标准。他们的回答为全面了解最先进的聚糖功能整理和注释提供了信息。本报告总结了讨论的结果,包括潜在的解决方案以及馆员、数据管理人员和文本挖掘专家可以合作的领域,以解决目前在聚糖和糖基化注释方面存在的差距,利用彼此的工作来改进各自的资源,并鼓励资源之间进行有影响力的数据共享。数据库网址:https://wiki.glygen.org/Glycan_Function_Workshop_2023.
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.

Dynamic changes in protein glycosylation impact human health and disease progression. However, current resources that capture disease and phenotype information focus primarily on the macromolecules within the central dogma of molecular biology (DNA, RNA, proteins). To gain a better understanding of organisms, there is a need to capture the functional impact of glycans and glycosylation on biological processes. A workshop titled "Functional impact of glycans and their curation" was held in conjunction with the 16th Annual International Biocuration Conference to discuss ongoing worldwide activities related to glycan function curation. This workshop brought together subject matter experts, tool developers, and biocurators from over 20 projects and bioinformatics resources. Participants discussed four key topics for each of their resources: (i) how they curate glycan function-related data from publications and other sources, (ii) what type of data they would like to acquire, (iii) what data they currently have, and (iv) what standards they use. Their answers contributed input that provided a comprehensive overview of state-of-the-art glycan function curation and annotations. This report summarizes the outcome of discussions, including potential solutions and areas where curators, data wranglers, and text mining experts can collaborate to address current gaps in glycan and glycosylation annotations, leveraging each other's work to improve their respective resources and encourage impactful data sharing among resources. Database URL: https://wiki.glygen.org/Glycan_Function_Workshop_2023.

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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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