Bo Cai, Yibin Huang, Dandan Liu, Yizheng You, Nuoshi Chen, Ligang Jie, Hongyan Du
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引用次数: 0
摘要
与健康人群相比,类风湿性关节炎(RA)患者罹患肺癌的风险较高。然而,有关 RA 与肺腺癌(LUAD)之间关系的研究很少,尤其是基因层面的机制。在这项研究中,我们调查了RA与肺腺癌之间有关铁突变相关基因的联系。我们从基因表达总库(GEO)中获得了RA(GSE77298和GSE82107)和LUAD(GSE75037)的RNA-seq数据。从网站( http://www.zhounan.org/ferrdb/ )上获得了 259 个铁变态反应相关基因。将从 RA 和 LUAD 数据集中获得的差异基因与铁变态反应相关基因进行交叉,得到了铁变态反应相关差异表达基因(FRDEGs)。接着,构建 mRNA-miRNA 网络,然后对目标基因进行基因组富集分析(Gene Set Enrichment Analysis,GSEA)。CIBERSORT 算法用于分析免疫浸润。最后,利用外部数据集(GSE89408 和 GSE48780)和癌症基因组图谱(TCGA)数据集对结果进行了验证。我们获得了 LUAD 和 RA 的共同 FRDEGs:FANCD2、HELLS、RRM2、G6PD、VLDLR。这五个基因在 RA 和 LUAD 的进展过程中起着重要作用。它们对这两种疾病也具有重要的诊断价值。此外,我们还发现 LUAD 和 RA 有共同的信号通路和相似的免疫机制。
Identification of the ferroptosis‐related gene signature and the associated regulation axis in lung cancer and rheumatoid arthritis
Patients with Rheumatoid arthritis (RA) have an elevated risk of lung cancer compared to the healthy population. However, there are few studies on the relationship between RA and lung adenocarcinoma (LUAD), especially the mechanisms at the genetic level. In this study, we investigated the link between RA and LUAD regarding Ferroptosis-Related Genes. The RNA-seq data of RA (GSE77298 and GSE 82107) and LUAD(GSE75037) in the Gene Expression Omnibus (GEO) database were obtained. 259 ferroptosis-related genes were obtained from the website ( http://www.zhounan.org/ferrdb/ ).The differential genes obtained from the RA and LUAD datasets were intersected with ferroptosis-related genes to obtain the ferroptosis-related differentially expressed genes (FRDEGs). Next, the mRNA-miRNA network was constructed, then Gene Set Enrichment Analysis (GSEA) for target genes were performed. The CIBERSORT algorithm was used to analyze the immune infiltration. Finally, the results were validated using external datasets (GSE89408 and GSE48780) and The Cancer Genome Atlas (TCGA) dataset. We obtained FRDEGs common to LUAD and RA: FANCD2, HELLS, RRM2, G6PD, VLDLR. These five genes play important roles in the progression of RA and LUAD. They also hold great diagnostic value for both diseases. Also, we found that LUAD and RA share common signaling pathways and similar immune mechanisms.
期刊介绍:
Genes & Immunity emphasizes studies investigating how genetic, genomic and functional variations affect immune cells and the immune system, and associated processes in the regulation of health and disease. It further highlights articles on the transcriptional and posttranslational control of gene products involved in signaling pathways regulating immune cells, and protective and destructive immune responses.