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引用次数: 0
摘要
南极洲以最荒凉的环境而闻名,这里的微生物在生命的前沿蓬勃发展。在过去几年中,南极环境中出现了许多新的细菌物种。在对来自南极的新型细菌物种进行分类学再评估时,发现 Kocuria polaris 与 Kocuria rosea 的 16S rRNA 基因序列高度相似。本研究通过基因组分析评估了 K. polaris 的分类位置、代谢潜力和应激生存策略。K. polaris编码糖酵解、柠檬酸循环、磷酸戊糖途径、硝酸盐异氨还原、硫酸盐同氨还原等基因。此外,K. polaris 还编码冷胁迫和盐胁迫基因。从 K. polaris 和 K. rosea 基因组中提取的 16S rRNA 基因序列显示出 99.7% 的相似性。在系统发生树中,K. polaris 和 K. rosea 聚类在一起。K. polaris和K. rosea的平均核苷酸同一性和数字DNA-DNA杂交值均超过了区分物种的临界值(ANI为95-96%,dDDH为70%),表明它们是相似物种。本研究揭示了北极熊在极端条件下的生存策略。我们还建议将 Kocuria polaris 重新分类为 Kocuria rosea 的异型异名。
Survival Strategy, Metabolic Potential and Taxonomic Reframe of Kocuria polaris
Antarctica is renowned as the most inhospitable environment where microorganisms are thriving in the frontiers of life. In the past few years, many novel bacterial species have been reported from the Antarctic environment. During taxonomic re-evaluation of novel bacterial species from Antarctica, it was noticed that Kocuria polaris shared high 16S rRNA gene sequence similarity with Kocuria rosea. In the present study, the taxonomic position, metabolic potentials, and stress survival strategy of K. polaris were evaluated through genome analysis. K. polaris encodes genes for glycolysis, citrate cycle, pentose phosphate pathway, dissimilatory nitrate reduction, assimilatory sulfate reduction, etc. In addition, K. polaris also encodes genes for cold and salt stress. The 16S rRNA gene sequence extracted from K. polaris and K. rosea genomes showed 99.7% similarity. In the phylogenomic tree, K. polaris and K. rosea clustered together. The average nucleotide identity and digital DNA–DNA hybridization values between K. polaris and K. rosea exceeded the threshold (95-96% for ANI and 70% for dDDH) value for distinguishing species, showing that they are similar species. The present study shed light on K. polaris survival strategy in extreme conditions. We further propose to reclassify Kocuria polaris as a later heterotypic synonym of Kocuria rosea.
期刊介绍:
Journal of Pure and Applied Microbiology (JPAM) is a peer-reviewed, open access international journal of microbiology aims to advance and disseminate research among scientists, academics, clinicians and microbiologists around the world. JPAM publishes high-quality research in all aspects of microbiology in both online and print form on quarterly basis.