Pannonibacter tanglangensis sp.

IF 3.3 4区 生物学 Q2 MICROBIOLOGY
Journal of Microbiology Pub Date : 2024-09-01 Epub Date: 2024-07-05 DOI:10.1007/s12275-024-00151-y
Lei Wang, Yanpeng Cheng, Panpan Yang, Jinjin Zhang, Gui Zhang, Sihui Zhang, Jing Yang, Zhen Zhang, Lulu Hu, Ji Pu, Yanying Yang, Xin-He Lai, Jianguo Xu, Yinghui Li, Qinghua Hu
{"title":"Pannonibacter tanglangensis sp.","authors":"Lei Wang, Yanpeng Cheng, Panpan Yang, Jinjin Zhang, Gui Zhang, Sihui Zhang, Jing Yang, Zhen Zhang, Lulu Hu, Ji Pu, Yanying Yang, Xin-He Lai, Jianguo Xu, Yinghui Li, Qinghua Hu","doi":"10.1007/s12275-024-00151-y","DOIUrl":null,"url":null,"abstract":"<p><p>Two bacterial strains (XCT-34<sup>T</sup> and XCT-53) isolated from sediment samples of an artificial freshwater reservoir were analyzed using a polyphasic approach. The two isolates are aerobic, Gram-stain-negative, oxidase-negative, catalase-positive, motile with polar flagella, rod-shaped, and approximately 1.4-3.4 × 0.4-0.9 μm in size. Phylogenetic analyses based on 16S rRNA gene and whole-genome sequences showed that the two strains formed a distinct branch within the evolutionary radiation of the genus Pannonibacter, closest to Pannonibacter carbonis Q4.6<sup>T</sup> (KCTC 52466). Furthermore, lower than threshold average nucleotide identity values (ANI, 85.7-86.4%) and digital DNA-DNA hybridization values (dDDH, 22.3-30.5%) of the two strains compared to the nearest type strains also confirmed that they represented a novel species. Genomic analyses, including annotation of the KEGG pathways, prediction of the secondary metabolism biosynthetic gene clusters and PHI phenotypes, supported functional inference and differentiation of the strains from the closely related taxa. Results of chemotaxonomic and physiological studies revealed that their distinct phenotypic characteristics distinguished them from existing Pannonibacter species. Thus, the two strains are considered to represent a novel species of Pannonibacter, for which the name of Pannonibacter tanglangensis sp. nov. is proposed, with XCT-34<sup>T</sup> (= KCTC 82332<sup>T</sup> = GDMCC 1.1947<sup>T</sup>) as the respective type strain.</p>","PeriodicalId":16546,"journal":{"name":"Journal of Microbiology","volume":" ","pages":"727-737"},"PeriodicalIF":3.3000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Pannonibacter tanglangensis sp. nov., a New Species Isolated from Pond Sediment.\",\"authors\":\"Lei Wang, Yanpeng Cheng, Panpan Yang, Jinjin Zhang, Gui Zhang, Sihui Zhang, Jing Yang, Zhen Zhang, Lulu Hu, Ji Pu, Yanying Yang, Xin-He Lai, Jianguo Xu, Yinghui Li, Qinghua Hu\",\"doi\":\"10.1007/s12275-024-00151-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two bacterial strains (XCT-34<sup>T</sup> and XCT-53) isolated from sediment samples of an artificial freshwater reservoir were analyzed using a polyphasic approach. The two isolates are aerobic, Gram-stain-negative, oxidase-negative, catalase-positive, motile with polar flagella, rod-shaped, and approximately 1.4-3.4 × 0.4-0.9 μm in size. Phylogenetic analyses based on 16S rRNA gene and whole-genome sequences showed that the two strains formed a distinct branch within the evolutionary radiation of the genus Pannonibacter, closest to Pannonibacter carbonis Q4.6<sup>T</sup> (KCTC 52466). Furthermore, lower than threshold average nucleotide identity values (ANI, 85.7-86.4%) and digital DNA-DNA hybridization values (dDDH, 22.3-30.5%) of the two strains compared to the nearest type strains also confirmed that they represented a novel species. Genomic analyses, including annotation of the KEGG pathways, prediction of the secondary metabolism biosynthetic gene clusters and PHI phenotypes, supported functional inference and differentiation of the strains from the closely related taxa. Results of chemotaxonomic and physiological studies revealed that their distinct phenotypic characteristics distinguished them from existing Pannonibacter species. Thus, the two strains are considered to represent a novel species of Pannonibacter, for which the name of Pannonibacter tanglangensis sp. nov. is proposed, with XCT-34<sup>T</sup> (= KCTC 82332<sup>T</sup> = GDMCC 1.1947<sup>T</sup>) as the respective type strain.</p>\",\"PeriodicalId\":16546,\"journal\":{\"name\":\"Journal of Microbiology\",\"volume\":\" \",\"pages\":\"727-737\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s12275-024-00151-y\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/7/5 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s12275-024-00151-y","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/7/5 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

采用多相法分析了从人工淡水水库沉积物样本中分离出的两株细菌(XCT-34T 和 XCT-53)。这两株分离菌株均为需氧菌,革兰氏染色阴性,氧化酶阴性,过氧化氢酶阳性,具有极性鞭毛,呈杆状运动,大小约为 1.4-3.4 × 0.4-0.9 μm。基于 16S rRNA 基因和全基因组序列的系统进化分析表明,这两株菌株在 Pannonibacter 属的进化辐射中形成了一个独特的分支,与 Pannonibacter carbonis Q4.6T (KCTC 52466)最为接近。此外,与最近的模式菌株相比,这两个菌株的平均核苷酸同一性值(ANI,85.7-86.4%)和数字 DNA-DNA 杂交值(dDDH,22.3-30.5%)均低于临界值,这也证实它们代表了一个新物种。基因组分析,包括 KEGG 通路的注释、次生代谢生物合成基因簇的预测和 PHI 表型,支持了功能推断和从近缘类群中区分菌株。化学分类学和生理学研究结果表明,这两株菌株具有不同的表型特征,与现有的 Pannonibacter 菌种有所区别。因此,这两株菌株被认为是 Pannonibacter 的一个新种,命名为 Pannonibacter tanglangensis sp.
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Pannonibacter tanglangensis sp. nov., a New Species Isolated from Pond Sediment.

Pannonibacter tanglangensis sp. nov., a New Species Isolated from Pond Sediment.

Two bacterial strains (XCT-34T and XCT-53) isolated from sediment samples of an artificial freshwater reservoir were analyzed using a polyphasic approach. The two isolates are aerobic, Gram-stain-negative, oxidase-negative, catalase-positive, motile with polar flagella, rod-shaped, and approximately 1.4-3.4 × 0.4-0.9 μm in size. Phylogenetic analyses based on 16S rRNA gene and whole-genome sequences showed that the two strains formed a distinct branch within the evolutionary radiation of the genus Pannonibacter, closest to Pannonibacter carbonis Q4.6T (KCTC 52466). Furthermore, lower than threshold average nucleotide identity values (ANI, 85.7-86.4%) and digital DNA-DNA hybridization values (dDDH, 22.3-30.5%) of the two strains compared to the nearest type strains also confirmed that they represented a novel species. Genomic analyses, including annotation of the KEGG pathways, prediction of the secondary metabolism biosynthetic gene clusters and PHI phenotypes, supported functional inference and differentiation of the strains from the closely related taxa. Results of chemotaxonomic and physiological studies revealed that their distinct phenotypic characteristics distinguished them from existing Pannonibacter species. Thus, the two strains are considered to represent a novel species of Pannonibacter, for which the name of Pannonibacter tanglangensis sp. nov. is proposed, with XCT-34T (= KCTC 82332T = GDMCC 1.1947T) as the respective type strain.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Microbiology
Journal of Microbiology 生物-微生物学
CiteScore
5.70
自引率
3.30%
发文量
0
审稿时长
3 months
期刊介绍: Publishes papers that deal with research on microorganisms, including archaea, bacteria, yeasts, fungi, microalgae, protozoa, and simple eukaryotic microorganisms. Topics considered for publication include Microbial Systematics, Evolutionary Microbiology, Microbial Ecology, Environmental Microbiology, Microbial Genetics, Genomics, Molecular Biology, Microbial Physiology, Biochemistry, Microbial Pathogenesis, Host-Microbe Interaction, Systems Microbiology, Synthetic Microbiology, Bioinformatics and Virology. Manuscripts dealing with simple identification of microorganism(s), cloning of a known gene and its expression in a microbial host, and clinical statistics will not be considered for publication by JM.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信