Alla P. Toropova, Andrey A. Toropov, Natalia Sizochenko
{"title":"利用相关理想性矢量模拟不同实验条件下纳米粒子的 zeta 电位,以准 SMILES 表示","authors":"Alla P. Toropova, Andrey A. Toropov, Natalia Sizochenko","doi":"10.1007/s11224-024-02357-7","DOIUrl":null,"url":null,"abstract":"<div><p>The modified version of quasi-SMILES is studied. Unlike the previous ones, the new version allows building codes of experimental conditions in a user-friendly (easily interpreted) form. The quasi-SMILES can be a convenient basis for discussion between experimentalists and developers of models. The optimal descriptors for regression one-parameter models were calculated with the Monte Carlo method, using the vector of ideality of correlation. The vector of the ideality of correlation has two components: (i) the index of ideality of correlation (<i>IIC</i>) and (ii) the correlation intensity index (<i>CII</i>). Both the indices are components of the stochastic Monte Carlo process. The contribution of these indices is paradoxical: they improve the statistical quality of a model on the external validation set but to the detriment of the statistical quality of the model for the training set. Taking into account <i>IIC</i> and <i>CII</i> values for the Monte Carlo optimization gives an improvement of models of zeta potential of considered nanoparticles. The described approach is convenient for modelling the zeta potential of the considered nanoparticles. No less important is the universality of the use of quasi-SMILES as a means for studying the values of endpoints in the form of mathematical functions of not only the structures of the simulated objects (nanoparticles) but also the experimental conditions.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"35 6","pages":"1925 - 1935"},"PeriodicalIF":2.1000,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Using the vector of the ideality of correlation to simulate the zeta potential of nanoparticles under different experimental conditions, represented by quasi-SMILES\",\"authors\":\"Alla P. Toropova, Andrey A. Toropov, Natalia Sizochenko\",\"doi\":\"10.1007/s11224-024-02357-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The modified version of quasi-SMILES is studied. Unlike the previous ones, the new version allows building codes of experimental conditions in a user-friendly (easily interpreted) form. The quasi-SMILES can be a convenient basis for discussion between experimentalists and developers of models. The optimal descriptors for regression one-parameter models were calculated with the Monte Carlo method, using the vector of ideality of correlation. The vector of the ideality of correlation has two components: (i) the index of ideality of correlation (<i>IIC</i>) and (ii) the correlation intensity index (<i>CII</i>). Both the indices are components of the stochastic Monte Carlo process. The contribution of these indices is paradoxical: they improve the statistical quality of a model on the external validation set but to the detriment of the statistical quality of the model for the training set. Taking into account <i>IIC</i> and <i>CII</i> values for the Monte Carlo optimization gives an improvement of models of zeta potential of considered nanoparticles. The described approach is convenient for modelling the zeta potential of the considered nanoparticles. No less important is the universality of the use of quasi-SMILES as a means for studying the values of endpoints in the form of mathematical functions of not only the structures of the simulated objects (nanoparticles) but also the experimental conditions.</p></div>\",\"PeriodicalId\":780,\"journal\":{\"name\":\"Structural Chemistry\",\"volume\":\"35 6\",\"pages\":\"1925 - 1935\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-06-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Structural Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s11224-024-02357-7\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Structural Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s11224-024-02357-7","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Using the vector of the ideality of correlation to simulate the zeta potential of nanoparticles under different experimental conditions, represented by quasi-SMILES
The modified version of quasi-SMILES is studied. Unlike the previous ones, the new version allows building codes of experimental conditions in a user-friendly (easily interpreted) form. The quasi-SMILES can be a convenient basis for discussion between experimentalists and developers of models. The optimal descriptors for regression one-parameter models were calculated with the Monte Carlo method, using the vector of ideality of correlation. The vector of the ideality of correlation has two components: (i) the index of ideality of correlation (IIC) and (ii) the correlation intensity index (CII). Both the indices are components of the stochastic Monte Carlo process. The contribution of these indices is paradoxical: they improve the statistical quality of a model on the external validation set but to the detriment of the statistical quality of the model for the training set. Taking into account IIC and CII values for the Monte Carlo optimization gives an improvement of models of zeta potential of considered nanoparticles. The described approach is convenient for modelling the zeta potential of the considered nanoparticles. No less important is the universality of the use of quasi-SMILES as a means for studying the values of endpoints in the form of mathematical functions of not only the structures of the simulated objects (nanoparticles) but also the experimental conditions.
期刊介绍:
Structural Chemistry is an international forum for the publication of peer-reviewed original research papers that cover the condensed and gaseous states of matter and involve numerous techniques for the determination of structure and energetics, their results, and the conclusions derived from these studies. The journal overcomes the unnatural separation in the current literature among the areas of structure determination, energetics, and applications, as well as builds a bridge to other chemical disciplines. Ist comprehensive coverage encompasses broad discussion of results, observation of relationships among various properties, and the description and application of structure and energy information in all domains of chemistry.
We welcome the broadest range of accounts of research in structural chemistry involving the discussion of methodologies and structures,experimental, theoretical, and computational, and their combinations. We encourage discussions of structural information collected for their chemicaland biological significance.