韩国濒危物种 Asplenium antiquum Makino 1929 的完整叶绿体基因组序列和系统发育分析。

IF 0.5 4区生物学 Q4 GENETICS & HEREDITY

Mitochondrial DNA. Part B, Resources Pub Date : 2024-05-20 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2356139

I-Jin Choi, Ho Jun Joh, Wan-Hee Lee, Dae-Sung Kim

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引用次数: 0

摘要

Asplenium antiquum Makino 1929 是朝鲜半岛的濒危特有物种之一。antiquum的完整叶绿体全长150,690 bp，具有典型的四方结构，包括一个大的单拷贝区（83,166 bp）、一个小的单拷贝区（21,932 bp）和两个倒置重复区，每个区长22,796 bp。在 A. antiquum 的叶绿体基因组中检测到 114 个基因，包括 84 个编码蛋白质的基因、26 个 tRNA 基因和 4 个 rRNA 基因。系统进化分析表明，A. antiquum与A. Prolongatum和A. nidus是单系关系，形成了天南星科天南星属的一个亚支系。本研究获得的基因组数据将为本草纲的物种遗传分类提供有价值的信息。

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The complete chloroplast genome sequence and phylogenetic analysis of Asplenium antiquum Makino 1929, an Endangered species in Korea.

Asplenium antiquum Makino 1929 is one of the Endangered endemic species on the Korean Peninsula. The complete chloroplast of A. antiquum is 150,690 bp in length with typical quadripartite structure comprised of large single-copy region of (83,166 bp), a small single copy region (21,932 bp), and two inverted repeat regions, each 22,796 bp in length. 114 genes were detected in the chloroplast genome of A. antiquum, comprising 84 protein-encoding genes, 26 tRNA genes, and 4 rRNA genes. The phylogenetic analysis revealed a monophyletic relationship, placing A. antiquum as a sister to voth A. Prolongatum and A. nidus, forming a subclade of Asplenium species within the Aspleniaceae family. The genomic data obtained from this study will serve as valuable information for the species' genetic classification of Asplenium.

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来源期刊

Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology

CiteScore

1.30

自引率

20.00%

发文量

670

期刊介绍： This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.