植物代谢相互作用的系统生物学

IF 2.1 4区生物学 Q2 BIOLOGY

Journal of Biosciences Pub Date : 2024-05-07 DOI:10.1007/s12038-023-00416-5

Devlina Sarkar, Sudip Kundu

{"title":"植物代谢相互作用的系统生物学","authors":"Devlina Sarkar, Sudip Kundu","doi":"10.1007/s12038-023-00416-5","DOIUrl":null,"url":null,"abstract":"<p>Metabolism is the key cellular process of plant physiology. Understanding metabolism and its dynamical behavior under different conditions may help plant biotechnologists to design new cultivars with desired goals. Computational systems biochemistry and incorporation of different omics data unravelled active metabolism and its variations in plants. In this review, we mainly focus on the basics of flux balance analysis (FBA), elementary flux mode analysis (EFMA), and some advanced computational tools. We describe some important results that were obtained using these tools. Limitations and challenges are also discussed.</p>","PeriodicalId":15171,"journal":{"name":"Journal of Biosciences","volume":"77 1","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2024-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Systems biology of plant metabolic interactions\",\"authors\":\"Devlina Sarkar, Sudip Kundu\",\"doi\":\"10.1007/s12038-023-00416-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Metabolism is the key cellular process of plant physiology. Understanding metabolism and its dynamical behavior under different conditions may help plant biotechnologists to design new cultivars with desired goals. Computational systems biochemistry and incorporation of different omics data unravelled active metabolism and its variations in plants. In this review, we mainly focus on the basics of flux balance analysis (FBA), elementary flux mode analysis (EFMA), and some advanced computational tools. We describe some important results that were obtained using these tools. Limitations and challenges are also discussed.</p>\",\"PeriodicalId\":15171,\"journal\":{\"name\":\"Journal of Biosciences\",\"volume\":\"77 1\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-05-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biosciences\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s12038-023-00416-5\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biosciences","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s12038-023-00416-5","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}

引用次数: 0

摘要

新陈代谢是植物生理的关键细胞过程。了解新陈代谢及其在不同条件下的动态行为，有助于植物生物技术专家设计出符合预期目标的新栽培品种。计算系统生物化学和不同的 omics 数据揭示了植物的活性代谢及其变化。在这篇综述中，我们主要关注通量平衡分析（FBA）、基本通量模式分析（EFMA）的基础知识和一些先进的计算工具。我们介绍了利用这些工具获得的一些重要结果。此外，还讨论了局限性和挑战。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

Systems biology of plant metabolic interactions

查看原文本刊更多论文

Systems biology of plant metabolic interactions

Metabolism is the key cellular process of plant physiology. Understanding metabolism and its dynamical behavior under different conditions may help plant biotechnologists to design new cultivars with desired goals. Computational systems biochemistry and incorporation of different omics data unravelled active metabolism and its variations in plants. In this review, we mainly focus on the basics of flux balance analysis (FBA), elementary flux mode analysis (EFMA), and some advanced computational tools. We describe some important results that were obtained using these tools. Limitations and challenges are also discussed.

求助全文

通过发布文献求助，成功后即可免费获取论文全文。去求助

来源期刊

Journal of Biosciences 生物-生物学

CiteScore

5.80

自引率

0.00%

发文量

审稿时长

3 months

期刊介绍： The Journal of Biosciences is a quarterly journal published by the Indian Academy of Sciences, Bangalore. It covers all areas of Biology and is the premier journal in the country within its scope. It is indexed in Current Contents and other standard Biological and Medical databases. The Journal of Biosciences began in 1934 as the Proceedings of the Indian Academy of Sciences (Section B). This continued until 1978 when it was split into three parts : Proceedings-Animal Sciences, Proceedings-Plant Sciences and Proceedings-Experimental Biology. Proceedings-Experimental Biology was renamed Journal of Biosciences in 1979; and in 1991, Proceedings-Animal Sciences and Proceedings-Plant Sciences merged with it.