两个长腿蟋蟀新热带种的系统发生组学 Endecous Saussure, 1878 (Orthoptera: Phalangopsidae)

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
A. F. E. Silva, H. R. Antoniolli, E. Zefa, V. L. S. Valente, M. Deprá
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引用次数: 0

摘要

摘要 线粒体基因组为了解几种昆虫的进化提供了重要信息。一个典型的有丝分裂基因组包含 37 个基因,基因顺序的变化可以表明物种之间的进化关系。在这项研究中,我们首次组装了Endecous chape和E. onthophagus的完整有丝分裂基因组,并分析了其对蝼蛄亚目系统发育的影响。我们对这两个Endecous物种进行了DNA提取和基因组测序。随后,我们在 NCBI 的序列读取档案(SRA)中搜索原始数据。利用 SRA 数据,我们组装了黑线栉水母(Dianemobius nigrofasciatus)的部分有丝分裂基因组,并注释了 9 个物种的蛋白质编码基因(PCGs)。利用最大似然法(ML)和贝叶斯推断法(BI)重建了 49 个蝼蛄物种的系统发生关系。E. chape 和 E. onthophagus 的有丝分裂基因组长度分别为 16,266 bp 和 16,023 bp,而 D. nigrofasciatus 的长度为 15,359 bp。我们的研究结果表明,下目中的物种表现出四种类型的基因顺序排列,这与它们的系统发育关系相一致。两个系统发生树都显示出很强的支持性,ML 与文献相吻合。蝼蛄属物种在各个领域都做出了重要贡献,研究它们的有丝分裂基因组可以为了解蝼蛄下目进化提供有价值的信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Phylomitogenomics of two Neotropical species of long-legged crickets Endecous Saussure, 1878 (Orthoptera: Phalangopsidae)
Abstract Mitochondrial genomes have provided significant insights into the evolution of several insects. A typical mitogenome contains 37 genes, and variations in gene order can indicate evolutionary relationships between species. In this study, we have assembled the first complete mitogenomes of Endecous chape and E. onthophagus and analyzed the phylogenetic implications for the Gryllidea infraorder. We performed DNA extractions and genome sequencing for both Endecous species. Subsequently, we searched for raw data in the Sequence Read Archive (SRA) in NCBI. Using the SRA data, we assembled the partial mitogenome of Dianemobius nigrofasciatus and annotated the protein-coding genes (PCGs) for nine species. Phylogenomic relationships were reconstructed using Maximum Likelihood (ML) and Bayesian Inference (BI), utilizing the PCGs from 49 Gryllidea species. The mitogenome lengths of E. chape and E. onthophagus are 16,266 bp and 16,023 bp, respectively, while D. nigrofasciatus has a length of 15,359 bp. Our results indicate that species within the infraorder exhibit four types of gene order arrangements that align with their phylogenetic relationships. Both phylogenomic trees displayed strong support, and the ML corroborated with the literature. Gryllidea species have significantly contributed to various fields, and studying their mitogenomes can provide valuable insights into this infraorder evolution.
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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